mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 42.1% | 31.8 / 22.3 | 38 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 753,125 | 0 | T | A | 40.0% | 50.8 / 26.0 | 40 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 4,111,752 | 0 | T | C | 34.3% | 49.8 / 12.1 | 35 | K155E (AAA→GAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.9% | 108.5 / 58.5 | 72 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,111,747 | 0 | G | T | 31.2% | 74.6 / 16.9 | 32 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 650,809 | 0 | T | G | 30.8% | 55.3 / 12.4 | 39 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 30.8% | 36.5 / 10.8 | 26 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,326,450 | 0 | T | G | 27.7% | 71.5 / 24.6 | 47 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,429,984 | 0 | T | G | 27.0% | 58.3 / 11.3 | 37 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 3,404,218 | 0 | T | G | 26.8% | 60.5 / 16.7 | 41 | G245G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 3,404,215 | 0 | T | G | 26.2% | 67.7 / 16.0 | 42 | G244G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 3,844,219 | 0 | T | G | 22.7% | 153.6 / 15.5 | 75 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NC_000913 | 753,105 | 0 | A | T | 22.0% | 125.1 / 10.9 | 50 | intergenic (‑310/+80) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 501,564 | 0 | A | C | 21.9% | 57.5 / 12.1 | 32 | *559E (TAA→GAA) | ybaL | putative transporter YbaL |
| * | NC_000913 | 3,525,012 | 1 | . | G | 20.0% | 56.7 / 19.0 | 25 | coding (2142/2553 nt) | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 50 (0.890) | 10 (0.190) | 10/258 | 3.3 | 18.2% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 43 (0.820) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1979340 | 28 (0.500) | 6 (0.110) | 5/276 | 5.2 | 17.6% | intergenic (‑125/‑413) | insA‑5/uspC | IS1 protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102943 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1522172 = | 76 (1.360) | 4 (0.070) | 4/266 | 5.5 | 5.2% | coding (894/2103 nt) | yncD | putative TonB‑dependent outer membrane receptor |
| ? | NC_000913 | = 1522168 | 73 (1.360) | coding (898/2103 nt) | yncD | putative TonB‑dependent outer membrane receptor | |||||
| * | ? | NC_000913 | = 1689658 | 46 (0.820) | 6 (0.110) | 3/258 | 5.9 | 13.6% | coding (1083/1176 nt) | manA | mannose‑6‑phosphate isomerase |
| ? | NC_000913 | = 1689742 | 33 (0.630) | coding (1167/1176 nt) | manA | mannose‑6‑phosphate isomerase | |||||