| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 1,466,591 | Δ11 bp | pseudogene (1200‑1210/2518 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1466590 | 0 (0.000) | 60 (0.960) | 48/274 | 0.2 | 100% | pseudogene (1199/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| ? | NC_000913 | 1466602 = | 0 (0.000) | pseudogene (1211/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment | |||||
GATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTG > NC_000913/1466451‑1466715 | gATCTGGATGTCAGCGGCGGCGGTCACGGTAATGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAA < 2:1060568‑M1/140‑1 (MQ=255) aTCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCGCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAg < 1:207055‑M1/140‑2 (MQ=255) cTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcg < 2:475420‑M1/140‑4 (MQ=255) ggATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgcc < 2:673367‑M1/140‑6 (MQ=255) aTGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccat < 2:841357‑M1/140‑8 (MQ=255) aGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcg > 1:1003744‑M1/1‑128 (MQ=255) aGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcg < 2:1003744‑M1/131‑4 (MQ=255) gcggcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacgg > 2:822770‑M1/1‑124 (MQ=255) ggcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtg > 2:195487‑M1/1‑122 (MQ=255) tCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcacc < 2:926389‑M1/140‑24 (MQ=255) tATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg < 1:1012713‑M1/140‑30 (MQ=255) tATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg < 1:195487‑M1/140‑30 (MQ=255) gATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg < 1:331714‑M1/136‑30 (MQ=255) gATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg > 2:331714‑M1/1‑107 (MQ=255) tatCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagatt < 1:1036336‑M1/140‑36 (MQ=255) tCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg > 2:53156‑M1/1‑103 (MQ=255) tCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg < 1:53156‑M1/132‑30 (MQ=255) tCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg < 1:172077‑M1/132‑30 (MQ=255) tCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacg > 2:172077‑M1/1‑103 (MQ=255) cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggt > 1:819285‑M1/1‑99 (MQ=255) cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaa < 2:670845‑M1/136‑38 (MQ=255) cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaa > 1:670845‑M1/1‑99 (MQ=255) gcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgcca < 2:819285‑M1/140‑52 (MQ=255) gcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgcca < 1:822770‑M1/140‑52 (MQ=255) gcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgcca < 1:1057544‑M1/140‑52 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacg < 2:362768‑M1/140‑67 (MQ=255) aGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacgg < 2:831393‑M1/140‑68 (MQ=255) gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgcca < 1:226357‑M1/123‑52 (MQ=255) gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgcca > 2:226357‑M1/1‑72 (MQ=255) cACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaa < 2:710637‑M1/139‑71 (MQ=255) cACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaa > 1:710637‑M1/1‑69 (MQ=255) aTGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaacca > 1:924882‑M1/1‑65 (MQ=255) tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaac < 1:406574‑M1/129‑66 (MQ=255) tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaac > 2:406574‑M1/1‑64 (MQ=255) aCCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccg < 2:397692‑M1/140‑79 (MQ=255) ccGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgt > 1:987795‑M1/1‑61 (MQ=255) tCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttga > 1:245201‑M1/1‑58 (MQ=255) tCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttga < 1:711053‑M1/140‑83 (MQ=255) cACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgac < 2:48648‑M1/140‑84 (MQ=255) tCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaag < 1:173242‑M1/140‑90 (MQ=255) ccGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaagg < 2:751851‑M1/140‑91 (MQ=255) gTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggc > 2:736193‑M1/1‑45 (MQ=255) gTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggc < 1:736193‑M1/131‑87 (MQ=255) ccATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccac < 2:245201‑M1/140‑98 (MQ=255) cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccacc > 2:534558‑M1/1‑42 (MQ=255) aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccg > 2:925912‑M1/1‑41 (MQ=255) cGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggt < 1:96033‑M1/140‑102 (MQ=255) tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggg > 2:331844‑M1/1‑34 (MQ=255) tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacgga > 1:300005‑M1/1‑34 (MQ=255) cAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaa < 1:584621‑M1/140‑109 (MQ=255) cAGGTTGACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaa > 2:584621‑M1/1‑32 (MQ=255) gACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctg > 2:423992‑M1/1‑26 (MQ=255) gACGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctg > 1:716900‑M1/1‑26 (MQ=255) aCGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctgg < 2:987795‑M1/140‑116 (MQ=255) cGGCGACCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctggc > 2:945474‑M1/1‑24 (MQ=255) aCCAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctggcaataa > 1:254670‑M1/1‑19 (MQ=255) ccAGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctggcaataac < 1:423992‑M1/140‑123 (MQ=255) aGGCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctggcaataacgg < 1:798175‑M1/140‑125 (MQ=255) ggCGGTTGTTAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctggcaataacggg > 1:670321‑M1/1‑15 (MQ=255) tgttAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctggc > 2:255474‑M1/1‑9 (MQ=255) tgttAACAAgcgccatcaccaacggtggcaccggcacgcagattaacggtgatgacgccacggcaaacaacaacggcaaaaccaccgttgacggcaaggattccaccggtacggaaattgctggc < 1:255474‑M1/125‑117 (MQ=255) | GATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTG > NC_000913/1466451‑1466715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |