mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 445,558 | 0 | A | C | 38.9% | 28.7 / 26.0 | 36 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 650,809 | 0 | T | G | 35.6% | 71.5 / 24.9 | 59 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 35.2% | 80.6 / 28.7 | 54 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 1,825,061 | 0 | G | A | 32.4% | 56.1 / 12.9 | 34 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.2% | 90.5 / 48.6 | 59 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,550,663 | 0 | A | C | 28.6% | 87.4 / 10.9 | 49 | N68T (AAC→ACC) | fdnH | formate dehydrogenase N subunit beta |
| * | NC_000913 | 4,111,747 | 0 | G | T | 28.6% | 91.2 / 16.1 | 35 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 27.7% | 79.3 / 15.6 | 47 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 2,326,450 | 0 | T | G | 27.6% | 96.1 / 28.9 | 58 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,377,140 | 0 | A | C | 26.8% | 96.5 / 11.9 | 56 | K103N (AAA→AAC) | ycjS | putative oxidoreductase YcjS |
| * | NC_000913 | 4,429,984 | 0 | T | G | 26.6% | 111.2 / 23.5 | 64 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 753,125 | 0 | T | A | 26.3% | 130.5 / 21.1 | 57 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,619,268 | 0 | T | G | 26.0% | 94.4 / 10.9 | 50 | V26G (GTA→GGA) | rhsB | rhs element protein RhsB |
| * | NC_000913 | 4,568,504 | 0 | T | G | 25.6% | 153.9 / 11.7 | 82 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 753,114 | 0 | G | T | 22.0% | 166.3 / 10.6 | 59 | intergenic (‑319/+71) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,404,215 | 0 | T | G | 21.3% | 99.1 / 11.2 | 47 | G244G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 2,583,424 | 0 | T | G | 20.6% | 139.4 / 10.8 | 63 | T19P (ACC→CCC) | nudK | GDP‑mannose hydrolase |
| * | NC_000913 | 1,679,688 | 0 | T | G | 20.3% | 148.4 / 11.5 | 69 | G44G (GGT→GGG) | ydgI | putative arginine:ornithine antiporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 54 (0.680) | 5 (0.070) | 4/256 | 6.8 | 7.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 80 (1.090) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3742074 | 64 (0.810) | 3 (0.040) | 3/270 | 7.6 | 4.5% | coding (459/849 nt) | yiaJ | DNA‑binding transcriptional repressor YiaJ |
| ? | NC_000913 | 3742078 = | 64 (0.820) | coding (455/849 nt) | yiaJ | DNA‑binding transcriptional repressor YiaJ | |||||
| * | ? | NC_000913 | = 3621559 | NA (NA) | 3 (0.040) | 3/268 | 7.6 | 100% | coding (2368/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | 3621563 = | 0 (0.000) | coding (2372/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NC_000913 | = 681259 | 61 (0.770) | 3 (0.040) | 3/268 | 7.6 | 3.8% | coding (1048/1452 nt) | djlC | co‑chaperone DjlC |
| ? | NC_000913 | = 1107394 | 94 (1.220) | coding (1040/1422 nt) | clsC | cardiolipin synthase C | |||||
| * | ? | NC_000913 | 3036731 = | 71 (0.900) | 3 (0.040) | 3/272 | 7.7 | 3.7% | coding (1376/1734 nt) | recJ | ssDNA‑specific exonuclease RecJ |
| ? | NC_000913 | 3036790 = | 84 (1.070) | coding (1317/1734 nt) | recJ | ssDNA‑specific exonuclease RecJ | |||||