New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 781143	33 (1.010)	15 (0.510) +TAAACACTTTTTAAC	8/246	1.7	41.7%	noncoding (76/76 nt)	valZ	tRNA‑Val
	?	NC_000913	2947605 =	14 (0.430)					intergenic (+32/‑2)	metW/metV	tRNA‑Met/tRNA‑Met

AGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATT  >  NC_000913/2947479‑2947743                                                                                                                               |                                                                                                                                           tgTAGAGCATTTCGGGGACGCGGGGGGGAGCAGCCTGGTAGCTCGGTGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                               <  2:1386610/139‑1 (MQ=14) agaaaaGCAGTCCGCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                               <  1:1697666/137‑1 (MQ=255)                tGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcg                                                                                                                >  1:1784892/1‑140 (MQ=255)                                  ccTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGaa                                                                                              >  1:1382403/1‑140 (MQ=255)                                      gTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGCAGAAAAAGCAGCACGTATACGCGGGGGGGACCAGCCTCGAAGCGCGTCGGGCTCATAACCCGAAGgtc                                                                                          >  2:1333750/1‑140 (MQ=14)                                      aggattagctcagctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGaaggcc                                                                                          >  1:578917‑M2/90‑138 (MQ=255)                                      aggattagctcagctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGaaggcc                                                                                          >  1:692863‑M2/90‑138 (MQ=255)                                           tagctcagctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAAACCgaaggccgcagg                                                                                     >  2:1038300‑M2/85‑136 (MQ=255)                                                cagctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCaa                                                                                >  2:733150‑M2/80‑140 (MQ=255)                                                  gctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAAt                                                                              >  1:368555‑M2/78‑140 (MQ=255)                                                  gctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAAt                                                                              >  1:677981‑M2/78‑140 (MQ=255)                                                  gctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAAt                                                                              >  2:377028‑M2/78‑140 (MQ=255)                                                  gctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAAt                                                                              >  1:931234‑M2/78‑140 (MQ=255)                                                  gctgggagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAAt                                                                              >  2:812266‑M2/78‑140 (MQ=255)                                                   ctggtagagcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGGTCAAATc                                                                             >  1:606819‑M2/77‑140 (MQ=255)                                                           gcatctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAATCCTGccccc                                                                     <  1:733150‑M2/72‑1 (MQ=255)                                                             atctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAATCCTGCCCCCGc                                                                   <  2:1013913‑M2/74‑1 (MQ=255)                                                              tctgccttacaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAATCCTGCCCCCGCa                                                                  <  1:226108‑M2/75‑1 (MQ=255)                                                                      acaagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAATCCTGCCCCCGCAaccaaatt                                                          >  2:913960‑M2/58‑137 (MQ=255)                                                                       caagcagagggtcggcggttcgatcccgtcatcctccaccataaacactttttaacGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCGGGCTCATAACCCGAAGGCCGCAGGTTCAAATCCTGCCCCCGCaaccaaatta                                                         <  2:677981‑M2/84‑5 (MQ=255)                                                                           cAAATCCGGCCCCCGCAACCAATCAAATTTGAATAAGTAAAAGCAGTACGGTGGGGCGGGTCGGAGGTGTCTAGGAGCCCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGaa                                                     <  2:1451491/140‑1 (MQ=14)                                                                            aaaTCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAac                                                    <  1:1333750/140‑1 (MQ=255)                                                                                   gCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCATTTATTGAAAACCCTac                                             >  1:1716411/1‑139 (MQ=255)                                                                                   gCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTaa                                             >  1:1240194/1‑140 (MQ=255)                                                                                                aTCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGttttttt                                >  2:1542592/1‑140 (MQ=255)                                                                                                              aGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTccc                  >  2:1773156/1‑140 (MQ=255)                                                                                                                         tACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTACTGGtc                      >  2:1573754/1‑125 (MQ=255)                                                                                                                         tACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTACTGGtc                      <  1:1573754/125‑1 (MQ=255)                                                                                                                              tGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCAtt  >  2:1517614/1‑140 (MQ=255)                                                                                                                               |                                                                                                                                           AGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATT  >  NC_000913/2947479‑2947743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.