mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 40.5% | 42.4 / 22.4 | 37 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 646,747 | 0 | T | G | 32.4% | 45.3 / 20.6 | 37 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1722616 = | 64 (1.120) | 4 (0.080) | 4/254 | 5.1 | 6.3% | coding (496/2013 nt) | ydhK | putative transporter YdhK |
| ? | NC_000913 | = 1722612 | 61 (1.170) | coding (492/2013 nt) | ydhK | putative transporter YdhK | |||||
| * | ? | NC_000913 | = 3921083 | 99 (1.740) | 4 (0.070) | 4/274 | 5.4 | 3.9% | coding (107/240 nt) | atpE | ATP synthase Fo complex subunit c |
| ? | NC_000913 | 3921088 = | 101 (1.790) | coding (102/240 nt) | atpE | ATP synthase Fo complex subunit c | |||||
| * | ? | NC_000913 | 2526714 = | 44 (0.770) | 3 (0.060) | 3/256 | 5.6 | 5.8% | coding (143/927 nt) | yfeR | putative LysR‑type DNA‑binding transcriptional regulator YfeR |
| ? | NC_000913 | = 3144052 | 57 (1.080) | coding (113/1179 nt) | hybB | hydrogenase 2 membrane subunit | |||||
| * | ? | NC_000913 | = 4542690 | 49 (0.860) | 3 (0.060) | 3/258 | 5.7 | 6.3% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 43 (0.810) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2861053 | 83 (1.460) | 3 (0.050) | 3/274 | 5.9 | 3.5% | coding (182/768 nt) | ygbI | putative DeoR‑type DNA‑binding transcriptional regulator YgbI |
| ? | NC_000913 | 2861057 = | 82 (1.450) | coding (178/768 nt) | ygbI | putative DeoR‑type DNA‑binding transcriptional regulator YgbI | |||||
| * | ? | NC_000913 | = 468893 | 65 (1.140) | 3 (0.050) | 3/274 | 5.9 | 4.4% | coding (23/1773 nt) | mdlA | ABC transporter family protein MdlA |
| ? | NC_000913 | 468897 = | 66 (1.170) | coding (27/1773 nt) | mdlA | ABC transporter family protein MdlA | |||||