New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 462691	71 (0.930)	3 (0.040)	3/258	7.7	4.8%	coding (777/1872 nt)	ppiD	periplasmic folding chaperone
	?	NC_000913	= 462899	52 (0.730)					coding (985/1872 nt)	ppiD	periplasmic folding chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACTTGATGAGCTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACATTGCGG  >  NC_000913/462768‑463031                                                                                                                                    |                                                                                                                                     tACTTGATGAGCTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGt                                                                                                                              <  2:1000132/140‑1 (MQ=255)  aCTTGATGAGCTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGGTATGGGGTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTc                                                                                                                             >  2:1282191/1‑140 (MQ=255)  aCTTGATGAGCTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTc                                                                                                                             >  1:1276146/1‑140 (MQ=255)     tgatgaGCTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTga                                                                                                                          >  2:100871/1‑140 (MQ=255)     tgatgaGCTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTga                                                                                                                          <  2:1276146/140‑1 (MQ=255)            cTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGaaaa                                                                                                                   >  1:915845/1‑140 (MQ=255)                   aaGGCGGTGATTTTGTTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCaa                                                                                                            <  2:1175855/140‑1 (MQ=255)                   aaGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCaa                                                                                                            <  1:100871/140‑1 (MQ=255)                   aaGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCaa                                                                                                            <  1:1248490/140‑1 (MQ=255)                       cGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGt                                                                                                        <  2:1174942/140‑1 (MQ=255)                         gTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCt                                                                                                      >  1:946459/1‑140 (MQ=255)                         gTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGGTGGGTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGGCTGAAAGAAAAAGGCCAACTGTCt                                                                                                      >  2:243090/1‑140 (MQ=255)                                tgctgcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGc                                                                                                               <  2:547598/124‑1 (MQ=255)                                tgctgcATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGc                                                                                                               >  1:547598/1‑124 (MQ=255)                                        tAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGGTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCt                                                                                       >  2:944992/1‑140 (MQ=255)                                                      tCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCt                                                                         <  2:915704/140‑1 (MQ=255)                                                            gATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGt                                                                   <  2:915845/140‑1 (MQ=255)                                                                ttatCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGt                                                               >  2:587704/1‑140 (MQ=255)                                                                 tatCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTc                                                              <  2:946459/140‑1 (MQ=255)                                                                     tctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGga                                                          <  2:73273/140‑1 (MQ=255)                                                                     tctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGga                                                          <  1:1284623/140‑1 (MQ=255)                                                                      ctGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGgac                                                         <  1:1179262/140‑1 (MQ=255)                                                                       tGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGGACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGgacg                                                        >  2:1301973/1‑140 (MQ=255)                                                                        gCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGgacga                                                       >  2:1044575/1‑140 (MQ=255)                                                                         cTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGgacgac                                                      >  1:394029/1‑140 (MQ=255)                                                                         cTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGgacgac                                                      >  2:285098/1‑140 (MQ=255)                                                                         cTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGAGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGgacgac                                                      >  2:729891/1‑140 (MQ=255)                                                                             tAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTc                                                  >  2:792411/1‑140 (MQ=255)                                                                                   cggcgATATGGGGTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTcagccag                                            >  1:611563/1‑140 (MQ=255)                                                                                      cgATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGa                                         <  1:910958/140‑1 (MQ=255)                                                                                      cgATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGa                                         >  2:985918/1‑140 (MQ=255)                                                                                                   ttAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGtt                            >  1:436766/1‑140 (MQ=255)                                                                                                    tAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTa                           <  2:1047759/140‑1 (MQ=255)                                                                                                           tGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAg                    <  1:587704/140‑1 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAga                   >  1:895308/1‑139 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  2:804329/1‑140 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  1:822736/1‑140 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  2:950638/1‑140 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  1:1203810/1‑140 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  1:353026/1‑140 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  2:860456/1‑140 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  2:848959/1‑140 (MQ=255)                                                                                                            gCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGt                   >  2:655557/1‑140 (MQ=255)                                                                                                             ccACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGt                             <  2:224722/129‑1 (MQ=255)                                                                                                             ccACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGt                             >  1:224722/1‑129 (MQ=255)                                                                                                               aCTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACg                <  1:655557/140‑1 (MQ=255)                                                                                                                 tATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTg              >  2:897466/1‑140 (MQ=255)                                                                                                                   tCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTgac            >  1:1285356/1‑140 (MQ=255)                                                                                                                     ccGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTgacga          <  2:436766/140‑1 (MQ=255)                                                                                                                        gACGAACTGAAAAGTGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACAt       >  2:446749/1‑140 (MQ=255)                                                                                                                        gACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACAt       >  2:790128/1‑140 (MQ=255)                                                                                                                        gACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACAt       >  2:420767/1‑140 (MQ=255)                                                                                                                        gACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACAt       >  1:427431/1‑140 (MQ=255)                                                                                                                             aCTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACATTgcgg  >  1:370429/1‑140 (MQ=255)                                                                                                                             aCTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACATTgcgg  >  1:497480/1‑140 (MQ=255)                                                                                                                                    |                                                                                                                                     TACTTGATGAGCTGAATAAAGGCGGTGATTTTGCTGCATTAGCCAAAGAAAAATCTGCCGATATTATCTCTGCTCGTAACGGCGGCGATATGGGTTGGTTAGAAGATGCCACTATCCCGGACGAACTGAAAAATGCTGGTCTGAAAGAAAAAGGCCAACTGTCTGGTGTCATCAAATCTTCGGTCGGTTTCCTGATTGTACGTCTGGACGACATTCAGCCAGCGAAAGTGAAATCGTTAGACGAAGTACGTGACGACATTGCGG  >  NC_000913/462768‑463031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.