BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3195519	121 (1.050)	3 (0.030)	3/276	9.6	2.3%	coding (1235/1434 nt)	rfaE	fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase
*	?	NC_000913	= 3195588	138 (1.200)	3 (0.030)	3/276	9.6	2.3%	coding (1166/1434 nt)	rfaE	fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 122 total aligned reads displayed.

AAAGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGCAACAATCAAGCGGTCACCCA  >  NC_000913/3195380‑3195657

aaaGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaa                                                                                                                                            <  2:414233/140‑1 (MQ=255)

 aaGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCATATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           <  1:56146/140‑1 (MQ=255)

 aaGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           <  2:452728/140‑1 (MQ=255)

 aaGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           <  2:94226/140‑1 (MQ=255)

 aaGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           <  1:564880/140‑1 (MQ=255)

 aaGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           <  1:64635/140‑1 (MQ=255)

 aaGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           <  1:1680908/140‑1 (MQ=255)

  aGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           <  1:870899/139‑1 (MQ=255)

  aGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCaaa                                                                                                                                           >  2:300408/1‑139 (MQ=255)

  aGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAAc                                                                                                                                          >  2:917619/1‑140 (MQ=255)

   gTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACg                                                                                                                                         <  2:1114691/140‑1 (MQ=255)

      gAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGaca                                                                                                                                      <  1:5686/140‑1 (MQ=255)

       aGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGacac                                                                                                                                     >  1:1150643/1‑140 (MQ=255)

              acacTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTACAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAg                                                                                                                              >  1:1673812/1‑140 (MQ=255)

                 cTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCg                                                                                                                           <  2:503838/140‑1 (MQ=255)

                   tCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGAc                                                                                                                         <  2:872397/140‑1 (MQ=255)

                   tCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGAc                                                                                                                         >  1:973311/1‑140 (MQ=255)

                   tCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGAc                                                                                                                         <  2:279696/140‑1 (MQ=255)

                    cGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGAcc                                                                                                                        >  2:1197355/1‑140 (MQ=255)

                      ccACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGc                                                                                                                      >  2:1227011/1‑140 (MQ=255)

                            ttGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAg                                                                                                                >  1:840038/1‑140 (MQ=255)

                              ggCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTg                                                                                                              >  2:137086/1‑140 (MQ=255)

                                cccAGACTTCTTTGCTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTgcg                                                                                                            <  2:1372790/140‑1 (MQ=255)

                                  cAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGcc                                                                                                          <  1:1245706/140‑1 (MQ=255)

                                     aCTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAg                                                                                                       <  1:80022/140‑1 (MQ=255)

                                     aCTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAg                                                                                                       <  1:1227011/140‑1 (MQ=255)

                                       ttcttTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGca                                                                                                     <  1:757808/140‑1 (MQ=255)

                                       ttcttTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGca                                                                                                     <  1:137086/140‑1 (MQ=255)

                                       ttcttTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACACAGTCGACCGCTTCCAGTGCGCCCAGca                                                                                                     <  2:1817446/140‑1 (MQ=255)

                                       ttcttTACTCCCGGCAATCTCTTCTGGTTTACAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGca                                                                                                     <  2:1673812/140‑1 (MQ=255)

                                               tCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACTCTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACaa                                                                                                  >  1:1625795/1‑135 (MQ=255)

                                               tCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACTCTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACaa                                                                                                  <  2:1625795/135‑1 (MQ=255)

                                               tCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATa                                                                                             <  1:1197355/140‑1 (MQ=255)

                                               tCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATa                                                                                             >  1:1860838/1‑140 (MQ=255)

                                                 ccGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACg                                                                                           <  2:1692117/140‑1 (MQ=255)

                                                 ccGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACg                                                                                           <  1:689452/140‑1 (MQ=255)

                                                   ggCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGTGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCt                                                                                         >  2:461315/1‑140 (MQ=255)

                                                   ggCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGTGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCt                                                                                         >  2:1549316/1‑140 (MQ=255)

                                                   ggCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCt                                                                                         >  1:228839/1‑140 (MQ=255)

                                                   ggCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCt                                                                                         >  1:780174/1‑140 (MQ=255)

                                                    gCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTg                                                                                        >  2:1887926/1‑140 (MQ=255)

                                                    gCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTg                                                                                        >  1:870818/1‑140 (MQ=255)

                                                    gCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTg                                                                                        <  2:623117/140‑1 (MQ=255)

                                                        tctcTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCg                                                                                    <  2:1153743/140‑1 (MQ=255)

                                                        tctcTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCg                                                                                    >  1:359476/1‑140 (MQ=255)

                                                        tctcTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCg                                                                                    <  1:917619/140‑1 (MQ=255)

                                                         ctctTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGa                                                                                   <  2:228839/140‑1 (MQ=255)

                                                         ctctTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGa                                                                                   <  2:359476/140‑1 (MQ=255)

                                                          tcttctGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAg                                                                                  <  2:1271033/140‑1 (MQ=255)

                                                          tcttctGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAg                                                                                  <  1:394982/140‑1 (MQ=255)

                                                           cttctGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGt                                                                                 >  1:673115/1‑140 (MQ=255)

                                                           cttctGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGt                                                                                 <  2:840038/140‑1 (MQ=255)

                                                              ctGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTggg                                                                              <  1:1583738/140‑1 (MQ=255)

                                                                ggTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGtt                                                                            <  2:1150643/140‑1 (MQ=255)

                                                                   ttATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTAc                                                                         <  2:870818/140‑1 (MQ=255)

                                                                   ttATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTAc                                                                         >  1:1752177/1‑140 (MQ=255)

                                                                    tataGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTAcc                                                                        >  1:312941/1‑140 (MQ=255)

                                                                       aGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACcggg                                                                     <  2:780174/140‑1 (MQ=255)

                                                                         tCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAg                                                                                  >  2:1126544/1‑125 (MQ=255)

                                                                         tCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAg                                                                                  <  1:1126544/125‑1 (MQ=255)

                                                                           gccgccTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACcgggcggg                                                                 >  2:625138/1‑140 (MQ=255)

                                                                              gccTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAAt                                                              <  2:952871/140‑1 (MQ=255)

                                                                                     aCCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCttt                                                       <  2:852751/140‑1 (MQ=255)

                                                                                       cagcagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTGCCCAGTCGACCGCTTCCAGTGTGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCa                                                     >  2:1148336/1‑140 (MQ=255)

                                                                                         gcagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGc                                                   >  1:994686/1‑140 (MQ=255)

                                                                                          cagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGcc                                                  >  1:951527/1‑140 (MQ=255)

                                                                                          cagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGcc                                                  >  1:128805/1‑140 (MQ=255)

                                                                                          cagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGcc                                                  >  1:1367660/1‑140 (MQ=255)

                                                                                          cagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGcc                                                  >  1:1850622/1‑140 (MQ=255)

                                                                                          cagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGcc                                                  >  1:884906/1‑140 (MQ=255)

                                                                                          cagATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGcc                                                  >  1:120189/1‑140 (MQ=255)

                                                                                            gATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGt                                                <  1:836257/140‑1 (MQ=255)

                                                                                             aTCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGtt                                               >  1:1014861/1‑140 (MQ=255)

                                                                                             aTCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGt                                                >  1:1045968/1‑139 (MQ=255)

                                                                                             aTCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGt                                                <  2:1045968/139‑1 (MQ=255)

                                                                                                   cAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTtggtgg                                         <  2:1537248/140‑1 (MQ=255)

                                                                                                    aaGATCCCGGCGATCAAGCGCTGTGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGa                                        <  1:1549316/140‑1 (MQ=255)

                                                                                                    aaGATCCCGGCGATCAAGCGCTGTGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGa                                        <  1:461315/140‑1 (MQ=255)

                                                                                                    aaGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGa                                        >  2:1656114/1‑140 (MQ=255)

                                                                                                       aTCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGt                                                <  1:1669389/129‑1 (MQ=255)

                                                                                                       aTCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGt                                                >  2:1669389/1‑129 (MQ=255)

                                                                                                        tCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCa                                    >  2:31267/1‑140 (MQ=255)

                                                                                                         cccGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCAt                                   <  1:136149/140‑1 (MQ=255)

                                                                                                            ggCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGc                                <  2:673115/140‑1 (MQ=255)

                                                                                                            ggCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGc                                >  1:1145164/1‑140 (MQ=255)

                                                                                                                aTCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGtt                            >  1:484769/1‑140 (MQ=255)

                                                                                                                aTCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGtt                            >  1:698265/1‑140 (MQ=255)

                                                                                                                      cgcTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGc                      <  2:1014861/140‑1 (MQ=255)

                                                                                                                          gcggcgTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGcaaca                  <  2:1860838/140‑1 (MQ=255)

                                                                                                                           cggcgTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGcaacaa                 >  1:1517946/1‑140 (MQ=255)

                                                                                                                           cggcgTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGcaacaa                 >  2:365839/1‑140 (MQ=255)

                                                                                                                           cggcgTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGcaacaa                 >  1:1958177/1‑140 (MQ=255)

                                                                                                                           cggcgTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGcaacaa                 >  1:417380/1‑140 (MQ=255)

                                                                                                                                tgtCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGc                      >  1:1567888/1‑130 (MQ=255)

                                                                                                                                tgtCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGc                      <  2:1567888/130‑1 (MQ=255)

                                                                                                                                 gtCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGCAACAATCAAGc           <  1:1887926/140‑1 (MQ=255)

                                                                                                                                    ctctTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGCAACAATCAAGCGGt        <  2:1778817/140‑1 (MQ=255)

                                                                                                                                       ttCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGCAACAATCAAGCGGTCAc     >  1:1641000/1‑140 (MQ=255)

                                                                                                                                       ttCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGCAACAATCAAGCGGTCAc     >  2:1312849/1‑140 (MQ=255)

                                                                                                                                          aaaCGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGCAACAATCAAGCGGTCACCCa  <  2:698265/140‑1 (MQ=255)

AAAGTTGAGCACCAACACTTCGCCACCGTTGGCCCAGACTTCTTTACTCCCGGCAATCTCTTCTGGTTTATAGTCGCCGCCTTTCACCAGCAGATCTGGCAAGATCCCGGCGATCAAGCGCTGCGGCGTGTCCTCTTCAAACGACACTACCCAGTCGACCGCTTCCAGTGCGCCCAGCACAATCATACGCTGTTCGAGTGGGTTTACCGGGCGGGAATCCCCTTTCAGCCGTTTGGTGGAGGCATCGCTGTTGACGGCAACAATCAAGCGGTCACCCA  >  NC_000913/3195380‑3195657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.