mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,825,061 | 0 | G | A | 50.0% | 11.4 / 12.1 | 20 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 4,604,344 | 0 | C | T | 47.9% | 36.1 / 36.6 | 48 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 35.7% | 47.3 / 16.7 | 28 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 33.3% | 40.0 / 15.5 | 33 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,568,512 | 0 | C | A | 33.3% | 63.3 / 12.1 | 27 | R3L (CGT→CTT) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 332,991 | 0 | G | T | 30.9% | 93.6 / 16.8 | 42 | L207F (TTG→TTT) | pdeL | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| * | NC_000913 | 753,125 | 0 | T | A | 29.4% | 63.9 / 11.9 | 34 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 646,747 | 0 | T | G | 26.8% | 67.6 / 20.6 | 41 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 646,760 | 0 | T | C | 22.5% | 81.4 / 12.4 | 41 | K250K (AAA→AAG) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 3,531,440 | 0 | A | C | 21.0% | 131.6 / 10.9 | 62 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2406181 = | 47 (1.000) | 8 (0.170) | 8/276 | 3.1 | 14.3% | coding (461/939 nt) | lrhA | DNA‑binding transcriptional dual regulator LrhA |
| ? | NC_000913 | = 2406260 | 49 (1.040) | coding (382/939 nt) | lrhA | DNA‑binding transcriptional dual regulator LrhA | |||||
| * | ? | NC_000913 | 4542682 = | 42 (0.890) | 4 (0.090) | 4/258 | 4.3 | 9.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 41 (0.940) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3361888 | 64 (1.360) | 3 (0.070) | 3/270 | 4.9 | 4.5% | coding (713/765 nt) | gltF | periplasmic protein GltF |
| ? | NC_000913 | 3361892 = | 64 (1.390) | coding (717/765 nt) | gltF | periplasmic protein GltF | |||||