mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 445,558 | 0 | A | C | 38.9% | 11.2 / 11.4 | 18 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 4,429,984 | 0 | T | G | 38.5% | 27.5 / 12.7 | 26 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 38.2% | 40.1 / 20.8 | 34 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,326,450 | 0 | T | G | 35.7% | 25.9 / 21.3 | 28 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.2% | 96.1 / 21.3 | 45 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,287,719 | 0 | T | A | 20.4% | 126.4 / 15.2 | 49 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2541736 = | 35 (0.910) | 4 (0.110) | 3/258 | 3.9 | 10.6% | coding (777/834 nt) | cysU | sulfate/thiosulfate ABC transporter inner membrane subunit CysU |
| ? | NC_000913 | = 2541732 | 35 (0.970) | coding (781/834 nt) | cysU | sulfate/thiosulfate ABC transporter inner membrane subunit CysU | |||||