New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1615389	31 (0.850)	3 (0.080)	3/274	3.9	9.0%	coding (586/882 nt)	yneJ	putative LysR‑type DNA‑binding transcriptional regulator YneJ
	?	NC_000913	1615393 =	30 (0.830)					coding (590/882 nt)	yneJ	putative LysR‑type DNA‑binding transcriptional regulator YneJ
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTCCGCGCTCTATGCTGGAAAGTATGCC  >  NC_000913/1615281‑1615531                                                                                                                 |                                                                                                                                           cgcaAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACgg                                                                                                                 <  1:351749/140‑1 (MQ=255)   cgAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTg                                                                                                               >  2:319893/1‑140 (MQ=255)   cgAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTg                                                                                                               >  2:280824/1‑140 (MQ=255)          cTGAGGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTcc                                                                                                        <  2:615773/140‑1 (MQ=255)               gatCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGaa                                                                                                   <  1:249183/140‑1 (MQ=255)               gatCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGaa                                                                                                   <  2:121515/140‑1 (MQ=255)                     cACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGT‑‑‑CACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATg                                                                                          >  2:78476/1‑140 (MQ=255)                       cGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCAt                                                                                           >  2:190973/1‑140 (MQ=255)                       cGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCAt                                                                                           >  2:129490/1‑140 (MQ=255)                           acaAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATgaga                                                                                       <  1:157769/140‑1 (MQ=255)                               ggATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATTGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGa                                                                                   >  1:200785/1‑140 (MQ=255)                               ggATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATg                                                                                     <  2:586044/138‑1 (MQ=255)                               ggATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATg                                                                                     >  1:586044/1‑138 (MQ=255)                                    tGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCtt                                                                              >  2:546648/1‑140 (MQ=255)                                      cgcCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGT‑‑CCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGTGAACTATCCATGAGATGGAGTCTTATCa                                                                          >  1:351940/1‑140 (MQ=255)                                          aGTAACCCGTGCCAGTCAGGTTAATTGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACg                                                                        <  2:200785/140‑1 (MQ=255)                                                   tGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTgg                                                               >  1:416808/1‑140 (MQ=255)                                                   tGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTgg                                                               >  2:319500/1‑140 (MQ=255)                                                   tGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTgg                                                               >  1:579520/1‑140 (MQ=255)                                                   tGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTC‑‑CGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGGCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGcc                                                             <  2:147728/140‑1 (MQ=255)                                                      cAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCt                                                            <  1:319500/140‑1 (MQ=255)                                                      cAGTCAGGTTAATGGCAGTAACATCTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCt                                                            >  1:561758/1‑140 (MQ=255)                                                         tCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCtgtg                                                         >  1:80932/1‑140 (MQ=255)                                                                     cAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAg                                             >  2:18642/1‑140 (MQ=255)                                                                         aaCATTTATGCCTTCCGCGCCAATTGTTCGTATCGT‑‑‑CACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCAt                                      <  1:78476/140‑1 (MQ=255)                                                                                aTGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTgcg                                  >  2:22269/1‑140 (MQ=255)                                                                                      tCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTAtt                            >  1:313122/1‑140 (MQ=255)                                                                                        cgcgCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTcc                          >  1:220872/1‑140 (MQ=255)                                                                                        cgcgCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTcc                          >  1:593882/1‑140 (MQ=255)                                                                                             cAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTCCGCGct                     <  2:220872/140‑1 (MQ=255)                                                                                             cAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTCCGCGct                     <  2:313122/140‑1 (MQ=255)                                                                                                  gTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTCCGCGCTCTATg                <  1:280824/140‑1 (MQ=255)                                                                                                             cgCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTCCGCGCTCTATGCTGGAAAGTAt     >  1:418101/1‑140 (MQ=255)                                                                                                                cACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTCCGCGCTCTATGCTGGAAAGTATGcc  <  2:211335/140‑1 (MQ=255)                                                                                                                 |                                                                                                                                           CGCGAGGAACTGATGATCGTCACGCCACAAGGATATGCGCCAGTAACCCGTGCCAGTCAGGTTAATGGCAGTAACATTTATGCCTTCCGCGCCAATTGTTCGTATCGTCGCCACTTCGAGAGCTGGTTTCATGCTGACGGTGCCGCTCCGGGAACTATCCATGAGATGGAGTCTTATCACGGAATGTTGGCCTGTGTGATCGCAGGAGCAGGCATTGCGCTTATTCCGCGCTCTATGCTGGAAAGTATGCC  >  NC_000913/1615281‑1615531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.