Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,291,318 | Δ150 bp | [galU] | [galU] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1291318 | 1291467 | 150 | 59 [0] | [0] 60 | [galU] | [galU] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1291317 | 0 (0.000) | 59 (1.250) | 43/276 | 0.1 | 100% | intergenic (+62/‑140) | rssB/galU | regulator of RpoS/UTP‑‑glucose‑1‑phosphate uridylyltransferase |
? | NC_000913 | 1291468 = | 0 (0.000) | coding (12/909 nt) | galU | UTP‑‑glucose‑1‑phosphate uridylyltransferase |
AGTAATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATACTGGGATGCGATACAGAAATATGAACACGTTCAAAACACGAACAGTCCAGGAGAATTTAAATGGCTGCCATTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGTATTG > NC_000913/1291330‑1291607 | ccagcgatgcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTa > 2:715314‑M2/139‑140 (MQ=255) gcgatgcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATa > 1:162783‑M2/136‑140 (MQ=255) atgcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGa < 2:162783‑M2/8‑1 (MQ=255) gcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGaaa < 2:64030‑M2/10‑1 (MQ=255) cgatgcctggctatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAg > 2:93378‑M2/130‑140 (MQ=255) caatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGc > 1:186997‑M2/120‑140 (MQ=255) tgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGt > 2:765361‑M2/117‑140 (MQ=255) ccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgaacaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTa > 1:105797‑M2/115‑140 (MQ=255) ggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGc > 2:347617‑M2/105‑140 (MQ=255) ggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGc > 2:740741‑M2/105‑140 (MQ=255) cggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAt < 1:765361‑M2/41‑1 (MQ=255) ggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAtt < 1:362284‑M2/42‑1 (MQ=255) ggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAtt < 2:383310‑M2/42‑1 (MQ=255) ggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAtt < 1:464451‑M2/42‑1 (MQ=255) gtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTa < 1:740741‑M2/43‑1 (MQ=255) cgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAAc < 1:347617‑M2/48‑1 (MQ=255) cgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcCAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGAt > 2:80042‑M2/87‑140 (MQ=255) tctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGATGCGGGATTAGGAACCAGGATGTTGCCGGcgac < 1:206989‑M2/66‑1 (MQ=255) gcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGaa > 2:534398‑M2/72‑140 (MQ=255) atgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCa < 1:428106‑M2/74‑1 (MQ=255) tgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCAt > 1:424361‑M2/66‑140 (MQ=255) gagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATc > 2:476275‑M2/65‑140 (MQ=255) gcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATccc > 2:54735‑M2/63‑140 (MQ=255) gcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATccc > 1:70970‑M2/63‑140 (MQ=255) cgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAag > 1:605758‑M2/58‑140 (MQ=255) taacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAgaga < 2:251411‑M2/86‑1 (MQ=255) aacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGAt > 1:382266‑M2/54‑140 (MQ=255) gctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCa > 1:662749‑M2/47‑140 (MQ=255) gctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCa > 2:317111‑M2/47‑140 (MQ=255) gctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCa > 1:509704‑M2/47‑140 (MQ=255) gcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGAt < 2:662749‑M2/103‑1 (MQ=255) gcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGAt < 1:80042‑M2/103‑1 (MQ=255) gcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGAt < 2:605758‑M2/103‑1 (MQ=255) cattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCAc > 2:645575‑M2/37‑131 (MQ=255) cattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCAc < 1:645575‑M2/95‑1 (MQ=255) attacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATaa < 1:170255‑M2/105‑1 (MQ=255) acctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGcc > 2:794640‑M2/33‑140 (MQ=255) acctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGcc > 2:551119‑M2/33‑140 (MQ=255) ctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCAt < 1:534398‑M2/110‑1 (MQ=255) gctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTa > 2:615550‑M2/29‑140 (MQ=255) tcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAAt > 2:410908‑M2/22‑140 (MQ=255) tcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAAt > 2:517844‑M2/22‑140 (MQ=255) tcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAAt > 2:771404‑M2/22‑140 (MQ=255) gctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg < 1:410908‑M2/122‑1 (MQ=255) gctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg > 2:411192‑M2/19‑140 (MQ=255) gctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg < 1:615550‑M2/122‑1 (MQ=255) gctggtggtactatcgtcTAATACGAAAGGCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGAGGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg < 2:202546‑M2/122‑1 (MQ=255) tggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtc < 1:440445‑M2/124‑1 (MQ=255) gtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtcgt > 2:28942‑M2/15‑140 (MQ=255) tggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtg < 1:476275‑M2/127‑1 (MQ=255) ggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtga < 2:712723‑M2/128‑1 (MQ=255) gtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaa < 2:186997‑M2/129‑1 (MQ=255) gtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaa < 2:70970‑M2/129‑1 (MQ=255) cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtcg > 2:23618‑M2/5‑129 (MQ=255) cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtcg < 1:23618‑M2/125‑1 (MQ=255) cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGt > 1:75101‑M2/5‑140 (MQ=255) cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGt > 1:11142‑M2/5‑140 (MQ=255) gtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaat > 2:689863‑M2/4‑133 (MQ=255) gtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaat < 1:689863‑M2/130‑1 (MQ=255) tAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGTATTg > 1:279759/1‑140 (MQ=255) | AGTAATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATACTGGGATGCGATACAGAAATATGAACACGTTCAAAACACGAACAGTCCAGGAGAATTTAAATGGCTGCCATTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGTATTG > NC_000913/1291330‑1291607 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |