Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,291,318	Δ150 bp		[galU]	[galU]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1291318	1291467	150	59 [0]	[0] 60	[galU]	[galU]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1291317	0 (0.000)	59 (1.250)	43/276	0.1	100%	intergenic (+62/‑140)	rssB/galU	regulator of RpoS/UTP‑‑glucose‑1‑phosphate uridylyltransferase
	?	NC_000913	1291468 =	0 (0.000)					coding (12/909 nt)	galU	UTP‑‑glucose‑1‑phosphate uridylyltransferase

AGTAATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATACTGGGATGCGATACAGAAATATGAACACGTTCAAAACACGAACAGTCCAGGAGAATTTAAATGGCTGCCATTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGTATTG  >  NC_000913/1291330‑1291607                                                                                                                                           |                                                                                                                                            ccagcgatgcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTa                                                                                                                                            >  2:715314‑M2/139‑140 (MQ=255)    gcgatgcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATa                                                                                                                                         >  1:162783‑M2/136‑140 (MQ=255)       atgcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGa                                                                                                                                      <  2:162783‑M2/8‑1 (MQ=255)         gcgatgcctggcaatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGaaa                                                                                                                                    <  2:64030‑M2/10‑1 (MQ=255)          cgatgcctggctatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAg                                                                                                                                   >  2:93378‑M2/130‑140 (MQ=255)                    caatgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGc                                                                                                                         >  1:186997‑M2/120‑140 (MQ=255)                       tgccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGt                                                                                                                      >  2:765361‑M2/117‑140 (MQ=255)                         ccaaatatggggaaccggtggtcgactgcgcttgatgttgtctgcagaatgaacaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTa                                                                                                                    >  1:105797‑M2/115‑140 (MQ=255)                                   ggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGc                                                                                                          >  2:347617‑M2/105‑140 (MQ=255)                                   ggaaccggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGc                                                                                                          >  2:740741‑M2/105‑140 (MQ=255)                                        cggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAt                                                                                                     <  1:765361‑M2/41‑1 (MQ=255)                                         ggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAtt                                                                                                    <  1:362284‑M2/42‑1 (MQ=255)                                         ggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAtt                                                                                                    <  2:383310‑M2/42‑1 (MQ=255)                                         ggtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGAtt                                                                                                    <  1:464451‑M2/42‑1 (MQ=255)                                          gtggtcgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTa                                                                                                   <  1:740741‑M2/43‑1 (MQ=255)                                               cgactgcgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAAc                                                                                              <  1:347617‑M2/48‑1 (MQ=255)                                                     cgcttgatgttgtctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcCAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGAt                                                                                        >  2:80042‑M2/87‑140 (MQ=255)                                                                 tctgcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGATGCGGGATTAGGAACCAGGATGTTGCCGGcgac                                                                            <  1:206989‑M2/66‑1 (MQ=255)                                                                    gcagaatgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGaa                                                                         >  2:534398‑M2/72‑140 (MQ=255)                                                                         atgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCa                                                                    <  1:428106‑M2/74‑1 (MQ=255)                                                                          tgagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCAt                                                                   >  1:424361‑M2/66‑140 (MQ=255)                                                                           gagcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATc                                                                  >  2:476275‑M2/65‑140 (MQ=255)                                                                             gcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATccc                                                                >  2:54735‑M2/63‑140 (MQ=255)                                                                             gcaaacgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATccc                                                                >  1:70970‑M2/63‑140 (MQ=255)                                                                                  cgataacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAag                                                           >  1:605758‑M2/58‑140 (MQ=255)                                                                                     taacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAgaga                                                        <  2:251411‑M2/86‑1 (MQ=255)                                                                                      aacgcgggctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGAt                                                       >  1:382266‑M2/54‑140 (MQ=255)                                                                                             gctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCa                                                >  1:662749‑M2/47‑140 (MQ=255)                                                                                             gctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCa                                                >  2:317111‑M2/47‑140 (MQ=255)                                                                                             gctaaatttgcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCa                                                >  1:509704‑M2/47‑140 (MQ=255)                                                                                                      gcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGAt                                       <  2:662749‑M2/103‑1 (MQ=255)                                                                                                      gcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGAt                                       <  1:80042‑M2/103‑1 (MQ=255)                                                                                                      gcattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGAt                                       <  2:605758‑M2/103‑1 (MQ=255)                                                                                                       cattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCAc                                               >  2:645575‑M2/37‑131 (MQ=255)                                                                                                       cattacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCAc                                               <  1:645575‑M2/95‑1 (MQ=255)                                                                                                        attacctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATaa                                     <  1:170255‑M2/105‑1 (MQ=255)                                                                                                           acctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGcc                                  >  2:794640‑M2/33‑140 (MQ=255)                                                                                                           acctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGcc                                  >  2:551119‑M2/33‑140 (MQ=255)                                                                                                             ctgctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCAt                                <  1:534398‑M2/110‑1 (MQ=255)                                                                                                               gctaatgtcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTa                              >  2:615550‑M2/29‑140 (MQ=255)                                                                                                                      tcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAAt                       >  2:410908‑M2/22‑140 (MQ=255)                                                                                                                      tcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAAt                       >  2:517844‑M2/22‑140 (MQ=255)                                                                                                                      tcggctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAAt                       >  2:771404‑M2/22‑140 (MQ=255)                                                                                                                         gctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg                    <  1:410908‑M2/122‑1 (MQ=255)                                                                                                                         gctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg                    >  2:411192‑M2/19‑140 (MQ=255)                                                                                                                         gctggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg                    <  1:615550‑M2/122‑1 (MQ=255)                                                                                                                         gctggtggtactatcgtcTAATACGAAAGGCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGAGGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcg                    <  2:202546‑M2/122‑1 (MQ=255)                                                                                                                           tggtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtc                  <  1:440445‑M2/124‑1 (MQ=255)                                                                                                                             gtggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtcgt                >  2:28942‑M2/15‑140 (MQ=255)                                                                                                                              tggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtg               <  1:476275‑M2/127‑1 (MQ=255)                                                                                                                               ggtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtga              <  2:712723‑M2/128‑1 (MQ=255)                                                                                                                                gtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaa             <  2:186997‑M2/129‑1 (MQ=255)                                                                                                                                gtactatcgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaa             <  2:70970‑M2/129‑1 (MQ=255)                                                                                                                                       cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtcg                 >  2:23618‑M2/5‑129 (MQ=255)                                                                                                                                       cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATAcgtcg                 <  1:23618‑M2/125‑1 (MQ=255)                                                                                                                                       cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGt      >  1:75101‑M2/5‑140 (MQ=255)                                                                                                                                       cgtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGt      >  1:11142‑M2/5‑140 (MQ=255)                                                                                                                                        gtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaat            >  2:689863‑M2/4‑133 (MQ=255)                                                                                                                                        gtcTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGtgaat            <  1:689863‑M2/130‑1 (MQ=255)                                                                                                                                           tAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGTATTg  >  1:279759/1‑140 (MQ=255)                                                                                                                                           |                                                                                                                                            AGTAATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATACTGGGATGCGATACAGAAATATGAACACGTTCAAAACACGAACAGTCCAGGAGAATTTAAATGGCTGCCATTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAATGAATGTATTG  >  NC_000913/1291330‑1291607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑