| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,012,255 | IS5 (+) +4 bp | pseudogene (94‑97/1129 nt) | yedN ← | putative type III secreted effector, N‑terminal fragment |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2012255 = | 0 (0.000) | 49 (0.850) | 29/276 | 0.8 | 100% | pseudogene (97/1129 nt) | yedN | putative type III secreted effector, N‑terminal fragment |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2012258 | 0 (0.000) | 87 (1.510) | 48/276 | 0.1 | 100% | pseudogene (94/1129 nt) | yedN | putative type III secreted effector, N‑terminal fragment |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
CGCCCTGGGCAATATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2012388‑2012255‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > NC_000913/2101749‑2101887 CGCCCTGGGCAATATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGG > 2:934934/1‑140 TATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCG > 1:721828/1‑140 ATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGG < 1:617419/140‑1 TTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAA > 2:83281/1‑140 TAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCT > 1:259060/1‑140 GTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG > 2:391519/1‑140 TAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT > 2:780421/1‑140 TAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT < 1:934934/140‑1 TCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT > 2:721995/1‑140 CATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC > 2:510103/1‑140 TCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAT > 1:580417/1‑140 TTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG > 1:805576/1‑140 AAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCG < 1:133480/140‑1 AAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCG < 2:580417/140‑1 AAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCG > 2:133480/1‑140 AGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTT < 1:164601/140‑1 TTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG > 2:827442/1‑140 AATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCC < 1:780421/140‑1 TAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTT > 1:803894/1‑140 AGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAA > 2:629691/1‑140 ACATCTAATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAG < 2:803894/140‑1 AATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATT > 1:813087/1‑140 ATACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTT > 2:516443/1‑140 TACTGAATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTA > 1:76957/1‑140 AATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCG > 1:479898/1‑140 AATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCG > 2:388349/1‑140 AATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCC < 2:88621/129‑1 AATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCC > 1:88621/1‑129 ATCTACGATAAAACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATATCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGT > 1:658630/1‑140 AACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAT > 1:818625/1‑140 AACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAT > 1:262048/1‑140 AACAACATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAT > 2:5129/1‑140 CATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAG > 1:164773/1‑140 CATGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAG > 1:530805/1‑140 GAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCG < 2:813087/140‑1 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT > 2:433161/1‑140 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT > 2:158672/1‑140 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT < 1:280986/140‑1 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT < 1:803341/140‑1 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGT < 2:605661/139‑1 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGT > 1:605661/1‑139 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCG < 2:76413/126‑1 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCG > 1:76413/1‑126 TAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAT > 1:507161/1‑140 AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC > 1:449383/1‑140 AGGGAAGGTGCGAATAAGAGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC > 1:605600/1‑140 GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC < 2:612267/140‑1 GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC < 1:383023/140‑1 GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC < 2:82113/140‑1 CGCCCTGGGCAATATAATTTATTAAACAGGAGTGTAAATGTTTCCATTAAATGATCTTTCGTTAAAAACTCAGCCGGTTCAATTAAATAAAGTCACATCTAATACTGAATCTACGATAAAACAACATGAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2012388‑2012255‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > NC_000913/2101749‑2101887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |