| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,012,255 | IS5 (+) +4 bp | pseudogene (94‑97/1129 nt) | yedN ← | putative type III secreted effector, N‑terminal fragment |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2012255 = | 0 (0.000) | 49 (0.850) | 29/276 | 0.8 | 100% | pseudogene (97/1129 nt) | yedN | putative type III secreted effector, N‑terminal fragment |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2012258 | 0 (0.000) | 87 (1.510) | 48/276 | 0.1 | 100% | pseudogene (94/1129 nt) | yedN | putative type III secreted effector, N‑terminal fragment |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
Only 100 of 131 total aligned reads displayed.
ATTCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAA > NC_000913/2012120‑2012397 | aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc > 2:158672‑M1/136‑140 (MQ=255)aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc > 2:433161‑M1/136‑140 (MQ=255)aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc < 1:803341‑M1/5‑1 (MQ=255)aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc < 1:280986‑M1/5‑1 (MQ=255) ttCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAgg < 1:42501‑M1/140‑3 (MQ=255) ttCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAgg < 1:372664‑M1/140‑3 (MQ=255) acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc < 2:605661‑M1/5‑1 (MQ=255) cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCAtg > 1:530805‑M1/131‑140 (MQ=255) cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCAtg > 1:164773‑M1/131‑140 (MQ=255) atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATgttgtt > 1:818625‑M1/126‑140 (MQ=255) atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATgttgtt > 1:262048‑M1/126‑140 (MQ=255) atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATgttgtt > 2:5129‑M1/126‑140 (MQ=255) aaTAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaa < 2:207927‑M1/140‑13 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc > 1:76413‑M1/122‑126 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAc < 2:76413‑M1/5‑1 (MQ=255) aaCTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaa < 2:248745‑M1/140‑16 (MQ=255) aCTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaag < 1:585091‑M1/140‑17 (MQ=255) aCTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaag < 2:409473‑M1/140‑17 (MQ=255) tAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtcc < 2:873396‑M1/140‑20 (MQ=255) tAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaaca > 1:106835‑M1/1‑121 (MQ=255) aaTTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccct < 2:691350‑M1/140‑22 (MQ=255) cggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGAtt > 2:388349‑M1/114‑140 (MQ=255) tGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaag < 2:231414‑M1/130‑17 (MQ=255) taaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTa > 1:76957‑M1/109‑140 (MQ=255) aCAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatga > 1:203015‑M1/1‑112 (MQ=255) aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTAtt > 1:813087‑M1/107‑140 (MQ=255) ggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGAtt > 1:88621‑M1/103‑129 (MQ=255) ggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGAtt < 2:88621‑M1/27‑1 (MQ=255) ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGAtgt < 2:803894‑M1/40‑1 (MQ=255) atTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat > 1:602318‑M1/1‑97 (MQ=255) aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACttta > 1:803894‑M1/94‑140 (MQ=255) tttGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc > 2:76391‑M1/1‑96 (MQ=255) tttGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc > 1:123066‑M1/1‑96 (MQ=255) tttGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc < 2:56708‑M1/140‑45 (MQ=255) tttGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc > 1:72820‑M1/1‑96 (MQ=255) tttGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc > 1:59437‑M1/1‑96 (MQ=255) ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACtttatt < 1:780421‑M1/49‑1 (MQ=255) tGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg > 2:654617‑M1/1‑94 (MQ=255) gCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg < 2:916522‑M1/140‑48 (MQ=255) tGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag < 1:750377‑M1/140‑50 (MQ=255) cTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca < 2:907081‑M1/140‑53 (MQ=255) cTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca < 2:123066‑M1/140‑53 (MQ=255) ttCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTGTGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 2:878813‑M1/1‑87 (MQ=255) cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGaa > 2:827442‑M1/84‑140 (MQ=255) cTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa < 2:59437‑M1/140‑58 (MQ=255) cTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa < 1:870803‑M1/140‑58 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCt < 1:164601‑M1/63‑1 (MQ=255) aTTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 2:469884‑M1/140‑61 (MQ=255) ttGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 2:700074‑M1/1‑79 (MQ=255) tGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 2:72820‑M1/140‑63 (MQ=255) tGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:400486‑M1/140‑63 (MQ=255) ggTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa < 1:804590‑M1/134‑58 (MQ=255) ggTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa > 2:804590‑M1/1‑77 (MQ=255) tgtAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc > 2:506449‑M1/1‑75 (MQ=255) tgtAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc > 1:702506‑M1/1‑75 (MQ=255) cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGtttt > 2:133480‑M1/71‑140 (MQ=255) cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGtttt < 2:580417‑M1/70‑1 (MQ=255) aCTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat < 1:654617‑M1/140‑71 (MQ=255) aCTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat < 1:13523‑M1/140‑71 (MQ=255) aCCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt > 1:620499‑M1/1‑66 (MQ=255) aCCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt > 2:715951‑M1/1‑66 (MQ=255) cAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact > 1:376793‑M1/1‑58 (MQ=255) gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATg > 2:510103‑M1/51‑140 (MQ=255) aCAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc < 2:702506‑M1/140‑87 (MQ=255) cTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg > 1:637060‑M1/1‑50 (MQ=255) cTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg > 1:124220‑M1/1‑50 (MQ=255) tGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc < 2:620499‑M1/140‑92 (MQ=255) cTAACTCACTTGAT‑ATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac < 1:360115‑M1/140‑96 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTa < 1:934934‑M1/100‑1 (MQ=255) cTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagtcatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt < 1:695418‑M1/140‑99 (MQ=255) tCACTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg > 2:165031‑M1/1‑41 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTacac > 2:391519‑M1/38‑140 (MQ=255) aCTTGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa > 1:878441‑M1/1‑39 (MQ=255) ttGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt < 2:799458‑M1/140‑104 (MQ=255) ttGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt < 2:124220‑M1/140‑104 (MQ=255) ttGATAATTCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt > 2:308850‑M1/1‑37 (MQ=255) agaatttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTta > 1:259060‑M1/29‑140 (MQ=255) ttCATTTATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagt < 1:495820‑M1/140‑111 (MQ=255) ttccccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATaaa > 2:83281‑M1/24‑140 (MQ=255) tttATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc < 2:637060‑M1/140‑115 (MQ=255) tATGATTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc > 1:228936‑M1/1‑24 (MQ=255) ccgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATtat < 1:617419‑M1/121‑1 (MQ=255) cgcttattcgcaccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATtata > 1:721828‑M1/19‑140 (MQ=255) aTTGCATCATCAGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc > 2:607538‑M1/1‑20 (MQ=255) tcaGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa > 1:534977‑M1/1‑11 (MQ=255) tcaGATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa < 2:878441‑M1/140‑130 (MQ=255) ccttccCTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGgcg > 2:934934‑M1/7‑140 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga < 1:882567‑M1/140‑136 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga < 2:362295‑M1/140‑136 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga > 2:443026‑M1/1‑5 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga < 2:465785‑M1/140‑136 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagat > 1:130556‑M1/1‑4 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt > 1:389328‑M1/1‑3 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa < 2:183836‑M1/133‑131 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa > 1:183836‑M1/1‑3 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 2:727866‑M1/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 1:741804‑M1/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 1:446125‑M1/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 2:494775‑M1/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 2:550688‑M1/1‑1 (MQ=255) | ATTCTGAGTGCAATAACTTAAATTCTGACAGCATATTAAATAATTTGCTGTCTTCACTAATTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAA > NC_000913/2012120‑2012397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |