mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,560,999 | 1 | . | G | 50.0% | 28.5 / 31.6 | 18 | intergenic (+101/‑369) | yffL/yffM | CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM |
| * | NC_000913 | 2,561,000 | 0 | A | T | 50.0% | ‑6.4 / 28.9 | 18 | intergenic (+102/‑368) | yffL/yffM | CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM |
| * | NC_000913 | 2,001,918 | 0 | A | C | 40.0% | 23.4 / 27.4 | 35 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 753,125 | 0 | T | A | 36.4% | 56.2 / 13.9 | 33 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 36.4% | 21.5 / 13.3 | 22 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,604,344 | 0 | C | T | 32.1% | 45.2 / 10.6 | 28 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,926,366 | 0 | A | C | 29.3% | 60.2 / 11.2 | 41 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.0% | 90.0 / 33.8 | 50 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,492,013 | 1 | . | G | 23.1% | 50.4 / 23.8 | 26 | coding (285/573 nt) | ppiA | peptidyl‑prolyl cis‑trans isomerase A |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 44 (1.030) | 8 (0.200) | 7/258 | 2.9 | 17.2% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 36 (0.900) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4373295 = | NA (NA) | 4 (0.100) | 3/256 | 4.4 | NA | noncoding (2/34 nt) | other | REP328b |
| ? | NC_000913 | 4374499 = | NA (NA) | noncoding (1/34 nt) | other | REP329a | |||||
| * | ? | NC_000913 | = 3646899 | 42 (1.030) | 5 (0.120) +CGC |
3/258 | 4.4 | 10.4% | coding (601/1353 nt) | gor | glutathione reductase (NADPH) |
| ? | NC_000913 | 3646900 = | 44 (1.030) | coding (602/1353 nt) | gor | glutathione reductase (NADPH) | |||||