breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,604,344	0	C	T	36.8%	75.1 / 30.2	57	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional regulator BglJ
*	NC_000913	4,296,060	0	C	T	35.5%	75.2 / 57.4	62	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
*	NC_000913	650,809	0	T	G	29.5%	83.8 / 10.5	44	T350P (ACC→CCC)	citC	citrate lyase synthetase
*	NC_000913	372,640	0	T	G	25.6%	71.8 / 10.3	39	L176V (TTA→GTA)	mhpD	2‑hydroxypentadienoate hydratase
*	NC_000913	3,206,435	0	C	T	24.4%	78.0 / 14.7	41	intergenic (‑179/‑28)	ttdR/ttdA	DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha
*	NC_000913	501,564	0	A	C	23.7%	82.8 / 12.4	38	*559E (TAA→GAA)	ybaL	putative transporter YbaL
*	NC_000913	2,236,876	0	A	C	20.9%	163.2 / 12.0	67	V293G (GTA→GGA)	mglC	D‑galactose/methyl‑galactoside ABC transporter membrane subunit
*	NC_000913	646,747	0	T	G	20.0%	95.9 / 11.3	40	T255P (ACC→CCC)	citG	triphosphoribosyl‑dephospho‑CoA synthase

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4097829 =	107 (1.680)	4 (0.070)	4/266	5.5	3.7%	coding (94/837 nt)	rhaS	DNA‑binding transcriptional activator RhaS
	?	NC_000913	= 4097825	107 (1.760)					coding (90/837 nt)	rhaS	DNA‑binding transcriptional activator RhaS
*	?	NC_000913	1134800 =	58 (0.910)	4 (0.060)	4/270	5.5	6.7%	coding (72/783 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_000913	= 1134796	55 (0.890)					coding (68/783 nt)	flgG	flagellar basal‑body rod protein FlgG