mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 31,939 | 0 | C | G | 63.7% | 311.1 / inf | 314 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,940 | 0 | G | C | 63.3% | 320.7 / inf | 316 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 63.0% | 298.4 / inf | 316 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,772 | 0 | A | C | 56.0% | inf / inf | 408 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 8,770 | 0 | G | C | 55.9% | 117.8 / inf | 408 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,771 | 0 | C | G | 55.9% | 119.0 / inf | 408 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | NC_000913 | 4,168,221 | 0 | T | C | 45.5% | 297.3 / inf | 301 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | BN000925 | 8,767 | 1 | . | C | 44.1% | 26.4 / inf | 408 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 4,168,215 | 0 | A | T | 43.9% | 320.0 / inf | 294 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | BN000925 | 31,941 | 1 | . | G | 36.4% | 284.3 / inf | 316 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,938 | 0 | C | . | 36.3% | 756.9 / inf | 311 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | NC_000913 | 4,168,472 | 0 | G | A | 23.4% | 472.2 / 156.3 | 231 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 21.1% | 571.8 / 153.2 | 227 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 21.1% | 503.7 / 138.5 | 227 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.1% | 371.8 / 91.7 | 159 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 31 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 83 (0.550) +G |
39/424 | 3.4 | 55.6% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4171849 | 133 (0.870) | intergenic (+93/‑208) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 42 (0.280) +G |
25/424 | 5.7 | 40.9% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4040729 | 122 (0.800) | intergenic (+93/+177) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 24 (0.160) | 13/408 | 8.7 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1536857 = | 2525 (16.500) | 16 (0.110) | 12/406 | 9.1 | 0.66% | coding (453/696 nt) | narW | NarW, putative private chaperone for NarZ nitrate reductase subunit |
| ? | NC_000913 | 1536890 = | 2396 (16.430) | coding (420/696 nt) | narW | NarW, putative private chaperone for NarZ nitrate reductase subunit | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 22 (0.140) +G |
9/424 | 10.6 | 28.5% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | 3423330 = | 111 (0.730) | intergenic (+136/+93) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 1540272 = | 1984 (12.970) | 8 (0.050) | 7/408 | 11.3 | 0.42% | coding (2319/3741 nt) | narZ | nitrate reductase Z subunit alpha |
| ? | NC_000913 | 1540335 = | 1862 (12.710) | coding (2256/3741 nt) | narZ | nitrate reductase Z subunit alpha | |||||
| * | ? | NC_000913 | = 3636853 | 106 (0.690) | 6 (0.040) | 6/398 | 11.7 | 5.8% | coding (558/1203 nt) | yhiN | putative oxidoreductase YhiN |
| ? | NC_000913 | = 3636839 | 95 (0.660) | coding (572/1203 nt) | yhiN | putative oxidoreductase YhiN | |||||
| * | ? | NC_000913 | 2765420 = | 169 (1.100) | 3 (0.020) | 3/338 | 12.5 | 2.4% | intergenic (‑267/+93) | abpA/yfjM | CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM |
| ? | NC_000913 | = 2765411 | 111 (0.920) | intergenic (‑258/+102) | abpA/yfjM | CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM | |||||
| * | ? | NC_000913 | = 1553950 | 2813 (18.380) | 9 (0.060) | 5/408 | 12.5 | 0.33% | intergenic (‑112/+22) | adhP/maeA | ethanol dehydrogenase/alcohol dehydrogenase/malate dehydrogenase, NAD‑requiring |
| ? | NC_000913 | = 1553956 | 2700 (18.430) | intergenic (‑118/+16) | adhP/maeA | ethanol dehydrogenase/alcohol dehydrogenase/malate dehydrogenase, NAD‑requiring | |||||
| * | ? | NC_000913 | = 1537458 | 2646 (17.290) | 5 (0.030) | 5/412 | 12.5 | 0.22% | coding (1396/1545 nt) | narY | nitrate reductase Z subunit beta |
| ? | NC_000913 | 1537756 = | 2042 (13.800) | coding (1098/1545 nt) | narY | nitrate reductase Z subunit beta | |||||