mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 31,939 | 0 | C | G | 64.4% | 235.3 / inf | 233 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,940 | 0 | G | C | 64.1% | 241.8 / inf | 234 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 64.1% | 244.3 / inf | 234 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,770 | 0 | G | C | 58.0% | 112.6 / inf | 250 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,771 | 0 | C | G | 58.0% | 103.4 / inf | 250 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,772 | 0 | A | C | 58.0% | 562.5 / inf | 250 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 4,168,221 | 0 | T | C | 48.5% | 107.2 / 212.6 | 132 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 47.7% | 107.7 / 223.9 | 128 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | BN000925 | 8,767 | 1 | . | C | 42.0% | 58.5 / inf | 250 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 31,941 | 1 | . | G | 35.9% | 207.6 / inf | 234 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,938 | 0 | C | . | 35.8% | 588.7 / 313.6 | 232 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | NC_000913 | 4,168,472 | 0 | G | A | 30.7% | 121.4 / 83.5 | 88 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 28.2% | 138.5 / 81.2 | 85 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 28.2% | 132.7 / 69.9 | 85 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 608010 | 79 (1.630) | 5 (0.110) | 5/402 | 4.4 | 7.4% | noncoding (4/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609360 = | 50 (1.090) | intergenic (+183/+99) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 5 (0.110) | 5/408 | 4.4 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 375012 | NA (NA) | 5 (0.110) | 5/414 | 4.5 | NA | noncoding (6/36 nt) | other | REP31b |
| ? | NC_000913 | 377518 = | NA (NA) | noncoding (5/34 nt) | other | REP32d | |||||
| * | ? | NC_000913 | = 3529405 | 53 (1.090) | 3 (0.060) | 3/406 | 5.3 | 5.6% | coding (58/402 nt) | hslR | heat shock protein Hsp15 |
| ? | NC_000913 | = 3529461 | 50 (1.080) | coding (114/402 nt) | hslR | heat shock protein Hsp15 | |||||
| * | ? | NC_000913 | 3220520 = | 44 (0.910) | 3 (0.060) | 3/408 | 5.3 | 6.8% | coding (1027/1380 nt) | patA | putrescine aminotransferase |
| ? | NC_000913 | 3220730 = | 40 (0.860) | coding (1237/1380 nt) | patA | putrescine aminotransferase | |||||
| * | ? | NC_000913 | 3129173 = | 57 (1.170) | 3 (0.060) | 3/406 | 5.3 | 6.5% | coding (1043/1173 nt) | yghO | putative DNA‑binding transcriptional regulator YghO |
| ? | NC_000913 | 3129340 = | 32 (0.690) | coding (876/1173 nt) | yghO | putative DNA‑binding transcriptional regulator YghO | |||||
| * | ? | NC_000913 | 589282 = | 71 (1.460) | 3 (0.060) | 3/408 | 5.3 | 4.8% | coding (1673/2973 nt) | nfrA | bacteriophage N4 receptor, outer membrane protein |
| ? | NC_000913 | 589515 = | 51 (1.100) | coding (1440/2973 nt) | nfrA | bacteriophage N4 receptor, outer membrane protein | |||||
| * | ? | BN000925 | = 41125 | 273 (1.030) | 8 (0.030) | 8/422 | 17.9 | 2.9% | coding (1485/2241 nt) coding (2430/3186 nt) |
traC2 traC1 |
TraC DNA primase TraC DNA primase and ssDNA binding protein |
| ? | BN000925 | = 41183 | 261 (0.990) | coding (1427/2241 nt) coding (2372/3186 nt) |
traC2 traC1 |
TraC DNA primase TraC DNA primase and ssDNA binding protein |
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| * | ? | BN000925 | 45612 = | 302 (1.130) | 6 (0.020) | 6/412 | 18.9 | 2.0% | coding (432/2214 nt) | traE | TraE putative helicase |
| ? | BN000925 | 45669 = | 286 (1.110) | coding (375/2214 nt) | traE | TraE putative helicase | |||||
| * | ? | BN000925 | 53361 = | 322 (1.210) | 5 (0.020) | 5/406 | 19.5 | 1.6% | coding (1065/1347 nt) | kfrC | KfrC protein |
| ? | BN000925 | = 53357 | 308 (1.210) | coding (1069/1347 nt) | kfrC | KfrC protein | |||||