mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,304,522 | 0 | G | T | 74.1% | 61.1 / 52.9 | 58 | intergenic (+129/+586) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,523 | 0 | G | C | 74.1% | 85.3 / 38.7 | 58 | intergenic (+130/+585) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,537 | 0 | A | G | 59.0% | 11.0 / 68.6 | 61 | intergenic (+144/+571) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,540 | 0 | C | T | 54.5% | ‑2.1 / 91.6 | 66 | intergenic (+147/+568) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,549 | 0 | C | T | 52.2% | 11.1 / 100.3 | 67 | intergenic (+156/+559) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 4,168,221 | 0 | T | C | 44.7% | 295.4 / inf | 291 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 43.1% | 323.9 / inf | 292 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 2,304,567 | 0 | C | T | 39.3% | 67.7 / 78.5 | 61 | intergenic (+174/+541) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,575 | 0 | G | A | 29.7% | 114.8 / 57.5 | 64 | intergenic (+182/+533) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 4,168,472 | 0 | G | A | 27.4% | 305.6 / 154.5 | 179 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 27.2% | 339.9 / 157.7 | 173 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 26.6% | 300.3 / 143.5 | 173 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 69 (0.620) +G |
27/424 | 3.6 | 53.8% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4171849 | 119 (1.060) | intergenic (+93/‑208) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 35 (0.310) +G |
20/424 | 4.9 | 39.9% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4040729 | 106 (0.950) | intergenic (+93/+177) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 15 (0.140) | 11/408 | 7.2 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 13 (0.120) +G |
10/424 | 7.7 | 18.1% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | 3423330 = | 118 (1.060) | intergenic (+136/+93) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 1411899 = | 93 (0.830) | 5 (0.050) | 5/374 | 9.2 | 5.5% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 90 (0.920) | pseudogene (51/51 nt) | ttcC | putative tRNA 2‑thiocytidine (s(2)C32) synthase | |||||
| * | ? | NC_000913 | 4542682 = | 122 (1.090) | 6 (0.060) | 5/408 | 9.8 | 5.0% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 112 (1.050) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 1070259 = | 113 (1.010) | 5 (0.050) | 5/414 | 9.9 | 4.4% | coding (96/495 nt) | rutF | flavin reductase |
| ? | NC_000913 | 1070307 = | 107 (0.980) | coding (48/495 nt) | rutF | flavin reductase | |||||
| * | ? | NC_000913 | = 3579387 | 167 (1.490) | 4 (0.040) | 4/406 | 10.3 | 2.4% | coding (259/696 nt) | yhhW | quercetin 2,3‑dioxygenase |
| ? | NC_000913 | = 3579470 | 167 (1.570) | coding (176/696 nt) | yhhW | quercetin 2,3‑dioxygenase | |||||
| * | ? | NC_000913 | = 4542690 | 111 (0.990) | 4 (0.040) | 4/408 | 10.4 | 3.5% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 112 (1.050) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 285874 = | 101 (0.900) | 4 (0.040) | 4/410 | 10.4 | 3.8% | coding (480/1383 nt) | yagG | putative D‑xylonate transporter YagG |
| ? | NC_000913 | 285896 = | 106 (0.980) | coding (502/1383 nt) | yagG | putative D‑xylonate transporter YagG | |||||