| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556942 = | NA (NA) | 8 (0.020) | 4/98 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 183 total aligned reads displayed.
TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557015‑3556942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > CP009273/3556967‑3557033 TCTGGCCTACACGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCAGATAAGCGTAGCGCA > 1:29206176/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:35362589/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:26247753/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA < 1:23161410/68‑1TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:29379482/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:1946603/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:36934078/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:39124635/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:42019369/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:5400962/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:8935905/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:10869876/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:11435144/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:819504/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:10029100/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGGAGCGCA > 1:37506693/1‑68 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:10233791/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:32153421/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:32948871/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:4315808/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:33563716/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:34183538/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:36380100/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:16363857/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:14475416/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:2731262/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGT‑GGCCTGATAAGCGTAGCGCATC > 1:41585670/1‑68 CTGGCCTACAAGACAATGCAAATTCAATATATTGCATAAACAAAGTAGGCCTGATAAGCGTAGCGCAT > 1:18497096/1‑68 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC > 1:29010645/1‑68 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC < 1:31942323/68‑1 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC < 1:1062149/68‑1 TGGCCTACAAGACCATGCAAATTCA‑‑ATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:2365673/68‑1 GGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCA > 1:30758199/1‑68 GGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCA > 1:23859228/1‑68 GCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:2792648/1‑68 GCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:33097452/1‑68 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:31556167/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:34502517/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:9570234/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:40432384/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:40802297/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:26658015/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:43042042/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:19857927/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:24851163/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:20977099/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:17104602/1‑67 CTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC < 1:28207613/68‑1 TAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGA < 1:799856/68‑1 TAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGA < 1:35087754/68‑1 TAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGA < 1:13275152/68‑1 AGCGAATAAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACG < 1:29830858/68‑1 TCAGGCCTACGTGGTTTATGCTATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:13733231/1‑68 TCAGGCCTACGTGGTTTATGCAATGTATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:24255290/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:13812994/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:37985857/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:11063444/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:37252549/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:36888712/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:3663724/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:36006459/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:4961663/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:18375523/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:33880202/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:25981526/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:25754193/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:25667213/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:22445562/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:2218352/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:31755202/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTCCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:39953714/68‑1 CAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGT < 1:13569811/68‑1 CAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:17418260/1‑67 CAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:1663144/1‑67 CAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:39993887/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:32377495/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:20782363/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:19165780/1‑67 CCTCCGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:11276492/1‑68 CCTACGTGGTTTATGCGATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:31116337/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:26768506/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:23749118/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:12436215/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:6324521/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:7039146/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:7688928/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:7741308/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:32696064/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:11227902/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:18775661/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:12727621/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:27243779/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:24603126/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:13998391/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:1604043/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:16791455/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:36748506/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:16999486/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:31698575/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTAACGTCGCA > 1:2163083/1‑68 TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557015‑3556942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > CP009273/3556967‑3557033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |