BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4382210	202 (0.380)	23 (0.050)	12/96	NT	10.5%	noncoding (34/76 nt)	glyV	tRNA‑Gly
*	?	CP009273	= 4382323	217 (0.480)	23 (0.050)	12/96	NT	10.5%	noncoding (35/76 nt)	glyX	tRNA‑Gly

Only 100 of 116 total aligned reads displayed.

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4382137‑4382210

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTC  <  CP009273/4382323‑4382259

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACG                                                                         >  1:33618/1‑68

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        <  1:10639153/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        <  1:31129986/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        <  1:29841861/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        <  1:23765395/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        <  1:28348426/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        >  1:42731025/1‑67

   GAAATGCGAAAATTACGAAAGCAAAATTGAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        >  1:24535654/1‑66

   GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        >  1:39047611/1‑66

   GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                        >  1:17224417/1‑66

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    <  1:10559486/68‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:2246056/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:17927078/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:25301149/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:17135195/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    <  1:15748500/68‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:43029104/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:1340063/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:33511602/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:12398159/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                    >  1:5956200/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACC                                                                      <  1:24147620/66‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:37936905/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:36195815/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:33024773/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:33200373/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:37693117/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:29481282/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:37661357/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:37397882/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:25099172/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:25587280/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:36528768/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:10383533/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:38466214/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:10777661/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:6339560/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:5642153/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:43568536/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:15549035/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:15976506/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:17062756/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:42679492/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:17874138/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:40930493/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:18247586/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:40489181/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:40099943/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:19726567/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                       <  1:21279607/65‑1

      ATGCGAAAATTACGAAAGCAAATTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:42359309/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:36273899/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:15126992/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:23348575/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:34294860/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:12431408/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:22114605/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                   <  1:10757677/68‑1

                TACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGT                                                         <  1:7801649/68‑1

                     AAGCAAAATTAAGTAGTACGCGGTAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCT                                                    <  1:28336353/68‑1

                     AAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTC                                                     <  1:20384589/67‑1

                     AAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTC                                                     <  1:2265834/67‑1

                      AGCAAAATTAAGTAGTCCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTA                                                   <  1:13825258/68‑1

                      AGCAAAATTAAGTAGTCCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTA                                                   <  1:18152577/68‑1

                      AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTA                                                   <  1:12069795/68‑1

                      AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTA                                                   <  1:19619326/68‑1

                      AGCAAAAAAAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTA                                                   <  1:2614311/68‑1

                       GCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCCAGGTCGTGCTCTc                                                   >  1:3461120/1‑66

                         AAAATTACGTAGTCCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTACCA                                                <  1:11068492/68‑1

                              TAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTACCAACTGA                                           <  1:1806965/68‑1

                                         CGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTAACAACAGAGGGATTCCCcc                                >  1:8715388/1‑66

                                          GGGAATAGCTCAGTTGGTAGAGCACGACCATGGCAAGGTCGTGCTCTACCAACTGTGCTATTCCCGCT                               >  1:28476570/1‑68

                                              ATAGCTCAGTTGGTAGAGCACGACCGTGGCAAGGTCGTGGTCTACCAACTGAGCTATTCCCGCGTGGG                           >  1:29281349/1‑68

                                                   TCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTTCCAACTGAGCTATTCCCGCGTGGGTGG                        >  1:32394546/1‑66

                                                   TCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGG                        >  1:43512950/1‑66

                                                           TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTT              >  1:5787851/1‑68

                                                           TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTT              >  1:5639356/1‑68

                                                           TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTT              >  1:6598778/1‑68

                                                           TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTT              >  1:24297632/1‑68

                                                                 ACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGC         >  1:27901970/1‑67

                                                                   GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT      <  1:38772513/68‑1

                                                                   GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT      <  1:691082/68‑1

                                                                   GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT      <  1:36182314/68‑1

                                                                   GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT      >  1:14881827/1‑68

                                                                   GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT      <  1:14717038/68‑1

                                                                    ACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTT     >  1:22299259/1‑68

                                                                    ACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGATGTGAAGCACTT     >  1:19058608/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTTGGTGGTCTGTGCTTTGCAGCACTTT    >  1:37390143/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTTTTCTTTGCAGCACTTT    >  1:17219635/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCCGCACTTT    >  1:42266534/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT    >  1:40249810/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT    >  1:40032471/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT    >  1:39938711/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT    >  1:22020549/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGATATGAAGCACTTT    >  1:10850449/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGT                       <  1:13254561/49‑1

                                                                      CTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTT   <  1:23811984/68‑1

                                                                      CTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTT   <  1:27104821/68‑1

                                                                      CTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT    >  1:29360181/1‑67

                                                                       TTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGGAGCACTTTTC  >  1:8958177/1‑68

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4382137‑4382210

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTC  <  CP009273/4382323‑4382259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.