| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4602145 | 282 (0.540) | 4 (0.010) | 4/90 | NT | 1.6% | intergenic (+39/‑83) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| ? | CP009273 | = 4602148 | 273 (0.650) | intergenic (+42/‑80) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 167 total aligned reads displayed.
TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4602069‑4602145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccagtccGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGAA < CP009273/4602148‑4602083 TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGACAATTTTATCCAA > 1:20487070/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:34642843/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:22731637/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:25406057/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:25847271/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:265903/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:26716762/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:30595483/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:10164734/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:6199410/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:7838856/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:32883401/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:34074155/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:35552608/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:38074650/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:38443695/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:38930881/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:11842303/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:11098631/1‑68TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAA > 1:43176899/1‑68 CCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAA > 1:41334922/1‑68 CCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAA < 1:12137239/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTATGAAAATTTTATCCAAAG < 1:32797652/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:9477695/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:4934373/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:37345261/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:43487686/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:2833810/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:40554387/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:8009218/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:12624935/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAG < 1:18277843/68‑1 CTGGTGAGTTTGTTCATGGGCCGAAAACGAACCTAGATTTCAGACCATTAGGAAAATTTTATCCAAA > 1:20594590/1‑67 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:17096233/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:30310122/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:14197171/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:33043199/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:14008587/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:26464491/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:13976441/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCA > 1:42153761/1‑68 GTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATAAAAAGCCA > 1:24420551/1‑68 TGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAG > 1:40084746/1‑68 TGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAG > 1:36099571/1‑68 TGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAG > 1:16413224/1‑68 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:37349009/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:33373942/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:34859892/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:6109573/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:22595363/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:40338979/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:40701589/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:42346952/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:31823027/68‑1 GAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT < 1:28723438/68‑1 AGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT > 1:24502489/1‑67 AGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGT > 1:39131846/1‑67 TTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCC < 1:20334635/66‑1 TTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTA > 1:21409437/1‑68 GACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGG > 1:12358358/1‑67 AAAGCCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCG > 1:17119906/1‑68 AGCCAGTGCGCTTGACTGGCTTTGGATAAAATTTTCTTAATGGGCTGTAATCTAGGGTCGTTTTCGGC < 1:19943217/68‑1 AGCCAGTCCGCTGGGCTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGC < 1:24796016/68‑1 AGCCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGC < 1:2140396/68‑1 GCCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGC > 1:12490920/1‑67 GCCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGC > 1:32825885/1‑67 GCCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGC > 1:19487886/1‑67 CCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTGGGCCa > 1:15721438/1‑67 CCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCC > 1:42038011/1‑68 CCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCC > 1:22319204/1‑68 CCAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCC > 1:22961292/1‑68 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCC < 1:43605377/67‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCC < 1:18704538/67‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCC < 1:36888467/66‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCC < 1:36273044/66‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCC < 1:27364212/66‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCC < 1:26503778/66‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCC < 1:13545190/66‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCC < 1:25386958/66‑1 CAGTCCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGGCGTTTTCGGCC < 1:32137553/66‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGAA < 1:38520222/68‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGAA < 1:27778236/68‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGAA < 1:15587538/68‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA > 1:7448966/1‑67 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA < 1:43196882/67‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA > 1:4721064/1‑67 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA > 1:9120969/1‑67 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA > 1:31144085/1‑67 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA > 1:40764346/1‑67 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA > 1:39650799/1‑67 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA < 1:36989820/67‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA < 1:35752404/67‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA < 1:16678417/67‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGA > 1:15358704/1‑67 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATG < 1:37217504/66‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATG < 1:29091520/66‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATG < 1:17014323/66‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATG < 1:10697946/66‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGGCGTTTTCGGCCCATG < 1:31556564/66‑1 CCGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGGCTGAAATCTAGGGTCGTTTTCGGCCCATGA < 1:40422968/67‑1 TCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4602069‑4602145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccagtccGCTGGACTGGCTTTGGATAAAATTTTCTTAATGGTCTGAAATCTAGGGTCGTTTTCGGCCCATGAA < CP009273/4602148‑4602083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |