| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4602145 | 282 (0.540) | 4 (0.010) | 4/90 | NT | 1.6% | intergenic (+39/‑83) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| ? | CP009273 | = 4602148 | 273 (0.650) | intergenic (+42/‑80) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 453 total aligned reads displayed.
TTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAA > CP009273/4602079‑4602212 | tttGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCa > 1:9190354/1‑68 (MQ=255) ttGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCa > 1:23635825/1‑67 (MQ=255) ttGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCC < 1:9499143‑M1/66‑1 (MQ=255) tCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCgg < 1:35752404‑M2/67‑3 (MQ=255) tCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCgg > 1:40506624‑M2/1‑65 (MQ=255) tCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCgg > 1:15358704‑M2/1‑65 (MQ=255) cATGGGCCGAAAACGCCCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCgg < 1:31556564‑M2/66‑3 (MQ=255) cATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCgg < 1:17014323‑M2/66‑3 (MQ=255) cATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCgg < 1:16715378‑M2/66‑3 (MQ=255) tggcCCAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCggactgg > 1:15721438‑M2/2‑61 (MQ=255) gggCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCggactgg > 1:34902519‑M2/1‑61 (MQ=255) gCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCggactggc > 1:12490920‑M2/1‑59 (MQ=255) gCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCggactggc > 1:32878486‑M2/1‑59 (MQ=255) gCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGCCCAGCggactggct < 1:24796016‑M2/68‑10 (MQ=255) gCCGAAAACGACCATAGATTTCAGACCATTAAGAAAACTTTATCCAAAGCCAGTCCAGCggactggct < 1:38703257‑M2/68‑10 (MQ=255) ccGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCcgactggct > 1:1779498‑M2/1‑58 (MQ=255) aCGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCCGCGGACTGGCTTTTGCgg < 1:39442936/68‑1 (MQ=255) cGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGt < 1:2250147/68‑1 (MQ=255) cGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGt < 1:13401675/68‑1 (MQ=255) cGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGt < 1:18754817/68‑1 (MQ=255) cGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGt < 1:28518242/68‑1 (MQ=255) aCCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGttt > 1:22297600/1‑68 (MQ=255) cccTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGttt < 1:76381/67‑1 (MQ=255) tAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGc < 1:38410722/68‑1 (MQ=255) aTTTCAGACCATTAAGAAAATTTTGTCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaa > 1:5911233/1‑68 (MQ=255) tttCAGACCATTAAGTAAATTATATCCAAAGCCAGTCCAGCTGACTGGCTTTTGCGGTTTTAGCGa < 1:24318780/66‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:31353699/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:22975902/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:11650958/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:31827523/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:27189559/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:29258582/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:42435923/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:43429966/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:20870130/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaat < 1:19883144/68‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaa < 1:33278571/67‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa < 1:20384247/66‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa < 1:2540721/66‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa < 1:32035486/66‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa < 1:35415119/66‑1 (MQ=255) tttCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGa < 1:22807623/66‑1 (MQ=255) tCAGACCATTAATAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaataa < 1:6138576/68‑1 (MQ=255) tCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaataa < 1:32656812/68‑1 (MQ=255) tCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaataa > 1:23849902/1‑68 (MQ=255) tCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaataa < 1:19351358/68‑1 (MQ=255) tCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGaataa > 1:30931402/1‑68 (MQ=255) aGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAataata > 1:34601943/1‑68 (MQ=255) aGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAataata > 1:26714670/1‑68 (MQ=255) aGACCAATAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAataata > 1:10531603/1‑68 (MQ=255) gACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAAtaataa > 1:37918362/1‑68 (MQ=255) aCCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGCCTGGCTTTTGCGGTTTTAGCGAATAATaaa > 1:41511842/1‑68 (MQ=255) aCCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATaaa > 1:29081642/1‑68 (MQ=255) ccATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAataata < 1:18491201/65‑1 (MQ=255) ccATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt > 1:530795/1‑68 (MQ=255) ccATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAt > 1:19567237/1‑68 (MQ=255) cATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt < 1:29745190/68‑1 (MQ=255) cATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt < 1:8083807/68‑1 (MQ=255) cATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAAtt < 1:16217378/68‑1 (MQ=255) aTTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTg < 1:892957/68‑1 (MQ=255) tAAGAAAATTTTATCCAAAGCCAGTCCAGCggactggctttggataaaattttcttaatggtctgaaa > 1:21409437‑M2/1‑30 (MQ=255) aaGAAAATTTTATCCAACGCCAGTCCCCCggactggctttggataaaattttcttaatggtctgaaat > 1:30169661‑M2/1‑29 (MQ=255) gAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGtt > 1:40607774/1‑67 (MQ=255) gAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGtt > 1:17113859/1‑67 (MQ=255) gAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGtt > 1:7210490/1‑67 (MQ=255) gAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGtt > 1:37089171/1‑67 (MQ=255) aaaTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGAGTTAc < 1:41855313/67‑1 (MQ=255) taTTTTATCCATTGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACtt < 1:40059544/67‑1 (MQ=255) aTTTTATCCCCAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACttt < 1:20738382/68‑1 (MQ=255) aTTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACttt < 1:36564077/68‑1 (MQ=255) tttATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGt < 1:12331294/68‑1 (MQ=255) ccAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCAt > 1:6378508/1‑66 (MQ=255) ccAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCAt > 1:25071885/1‑66 (MQ=255) cAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCt < 1:2622887/68‑1 (MQ=255) gCCAGTCCgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcc < 1:37272407‑M1/68‑61 (MQ=255) gCCAGTCCgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggc > 1:19487886‑M1/1‑8 (MQ=255) gCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc > 1:17334767/1‑67 (MQ=255) gCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc > 1:14968654/1‑67 (MQ=255) gCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc > 1:410816/1‑67 (MQ=255) gCCAGTCCAGCGGACTGGCGTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc > 1:13811557/1‑67 (MQ=255) ccAGTCCgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggccc > 1:38341832‑M1/1‑7 (MQ=255) ccAGTCCgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggccc > 1:10831384‑M1/1‑7 (MQ=255) ccAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTcac > 1:34212479/1‑68 (MQ=255) ccAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTcac > 1:11350937/1‑68 (MQ=255) cAGTCCgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcc < 1:26503778‑M1/66‑61 (MQ=255) cAGTCCgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcc < 1:39925583‑M1/66‑61 (MQ=255) ccgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatgaa < 1:27778236‑M1/68‑67 (MQ=255) ccgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatga < 1:43196882‑M1/67‑66 (MQ=255) ccgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatga > 1:4721064‑M1/1‑2 (MQ=255) ccgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatga < 1:36989820‑M1/67‑66 (MQ=255) ccgctggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatg < 1:27544053‑M1/66‑65 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaac < 1:42863558/66‑1 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaa < 1:36100262/65‑1 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaa < 1:3037872/65‑1 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCAcaacaa > 1:14732527/1‑68 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCAcaacaa > 1:32347678/1‑68 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCAcaacaa > 1:31111101/1‑68 (MQ=255) ccAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCAcaacaa > 1:21348640/1‑68 (MQ=255) cAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACaaa > 1:20044290/1‑68 (MQ=255) cAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACaaa > 1:10148675/1‑68 (MQ=255) | TTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAA > CP009273/4602079‑4602212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |