| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 354 (0.670) | 3060 (9.570) +CGTTTTTTTGGATGGAGGAATT |
55/68 | NT | 91.7% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 553 (1.050) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 6838 total aligned reads displayed.
TTATCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/66626‑66560‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC < CP009273/3509273‑3509206 |||||||||||||||||||||| TATCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG > 1:11972229/1‑68 TCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT > 1:9241118/1‑68 TCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT < 1:13695202/68‑1 CCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTT > 1:27122263/1‑68 CCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTT > 1:24844160/1‑68 CCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTATCCATACCCGTTT > 1:6533379/1‑68 CATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTT < 1:20953679/68‑1 CATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTT < 1:37734951/68‑1 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAT > 1:18950274/1‑68 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAG > 1:20184651/1‑68 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAG > 1:42471466/1‑68 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAG > 1:32881583/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:13302946/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:26391512/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:16808104/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:5212230/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGA < 1:34014832/66‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGA < 1:2860742/66‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGA < 1:3570271/66‑1 agCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGA < 1:40964256/65‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAAT > 1:10852423/1‑68 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAAT > 1:3604022/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:35317395/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:6080136/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:36448077/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:15329748/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:4328971/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:17145066/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:30171075/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:4776174/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTAATG > 1:12468765/1‑68 CCTGACGCCTTTTATCGCAACTCTCTACTGCTTCTCCATACCCGTTTTTTTGGATGGAGGAATTGATG > 1:32485450/1‑68 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGA > 1:12920658/1‑68 TGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAA > 1:24134333/1‑68 TGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAA < 1:15647481/68‑1 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAA > 1:25672127/1‑68 GCTTATTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAA > 1:40514438/1‑68 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAA < 1:14972095/67‑1 ATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGC > 1:3976588/1‑67 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGC > 1:19778225/1‑66 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:8136511/67‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:14457625/67‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:20514856/67‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:38105034/67‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:41344689/67‑1 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTT < 1:26054310/68‑1 TCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTG > 1:40160166/1‑68 CTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAG > 1:2934941/1‑68 ACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTG > 1:22911880/1‑68 ACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTG > 1:18543622/1‑68 ACTGTTTCTCCATACCCGTTTTTTTCGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGag > 1:42099564/1‑66 CTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG < 1:37245581/68‑1 CTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG < 1:19376110/68‑1 TGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:38880159/1‑67 TGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:3135085/1‑67 GTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGC > 1:33638061/1‑68 GTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGC > 1:36874066/1‑68 GTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGC > 1:42884301/1‑68 TTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:33258357/1‑68 TCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGG < 1:25256718/68‑1 CTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGG > 1:22144149/1‑68 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG < 1:9554351/68‑1 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG < 1:18194676/68‑1 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:31762217/1‑68 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:29781632/1‑68 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG < 1:21636806/68‑1 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:11212674/1‑68 CATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:30972542/1‑68 CATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:28201362/1‑68 CATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:39299003/1‑68 ATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA < 1:29047387/68‑1 TACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAA < 1:30585484/68‑1 TACCCCTTTTTTTGGATTGAGGAATTCATGAATAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA < 1:77856/67‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:1747371/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:15958498/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:5634614/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:14023867/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:26723784/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:38486993/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:27461056/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:34869766/68‑1 GTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATC < 1:6944469/68‑1 TTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCC < 1:7380047/68‑1 TTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCT < 1:16369746/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:4376605/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:23367962/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:17843900/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:32176409/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:22511203/68‑1 TGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCT > 1:10004047/1‑68 ATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:27849590/1‑68 ATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTG < 1:8899822/67‑1 ATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTG < 1:10433818/67‑1 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATA > 1:24513999/1‑68 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:41684149/67‑1 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:21312007/67‑1 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:23745972/67‑1 TCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA > 1:11570460/1‑67 TCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA > 1:85054/1‑67 TCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA > 1:34403437/1‑67 |||||||||||||||||||||| TTATCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/66626‑66560‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC < CP009273/3509273‑3509206 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |