| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 354 (0.670) | 3060 (9.570) +CGTTTTTTTGGATGGAGGAATT |
55/68 | NT | 91.7% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 553 (1.050) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 5884 total aligned reads displayed.
TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 | tacttgcccccgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:30770081‑M1/67‑68 (MQ=255) acttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:16212410‑M1/67‑68 (MQ=255) acttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:29981178‑M1/67‑68 (MQ=255) acttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:11973836‑M1/67‑68 (MQ=255) acttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:22506402‑M1/67‑68 (MQ=255) acttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:22926147‑M1/67‑68 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:32326821‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:41687091‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:21287280‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:2723146‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:28785726‑M1/3‑1 (MQ=255) tgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTAt < 1:31616086‑M1/5‑1 (MQ=255) gccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATg > 1:26088199‑M1/63‑68 (MQ=255) gccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATg > 1:5989646‑M1/63‑68 (MQ=255) gccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATg > 1:39299003‑M1/63‑68 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:3691616‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:26831505‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:9554351‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:14321612‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatacaaaaaaacgGGTATGga < 1:17372155‑M1/8‑1 (MQ=255) cctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgaga < 1:35432839‑M1/10‑1 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:42462028‑M1/58‑68 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:8885057‑M1/58‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:41331771‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc < 1:4050306‑M1/13‑1 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:15164021‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttaatgaattcctccatccataaaaacgGGTATGGAGAAAc > 1:34586657‑M1/56‑68 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa < 1:10826824/67‑1 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:24856074‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:35008912‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:36066555‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:13927615‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:20457606‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAg < 1:8503808‑M1/15‑1 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:22131279‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:38491684‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:3194992‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:33046120‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:19299140‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:25259682‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:734598‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:26462305‑M1/53‑68 (MQ=255) tcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagag < 1:32704801‑M1/20‑1 (MQ=255) ttGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTagaga > 1:7767183/1‑68 (MQ=255) caaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagaga > 1:21663310‑M1/48‑68 (MQ=255) tGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTagaga < 1:14806728/67‑1 (MQ=255) aaaaaagcgcgatttttcttcatgaattcctccatccaaaaaatcgGGTATGGAGAAACAGTagagag > 1:24523467‑M1/47‑68 (MQ=255) aaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGt < 1:5555988‑M1/23‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:28384051‑M1/24‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:19708104‑M1/24‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:23750744‑M1/24‑1 (MQ=255) aaagcgcgatttttcttcatgaattcctccatcaaaaaaaaagCGTATGGAGAAACAGTAGAGAGtt < 1:38138158‑M1/24‑1 (MQ=255) aagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGc > 1:29166047‑M1/43‑68 (MQ=255) agcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCg < 1:17096506‑M1/27‑1 (MQ=255) gcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGAt > 1:12941917‑M1/39‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa > 1:18886337/1‑47 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:6899890/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:39733351/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:29543880/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:136364/1‑67 (MQ=255) tttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGc > 1:25672127‑M1/33‑68 (MQ=255) tcttcatgaattcctccatccaaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCg > 1:43293813‑M1/32‑68 (MQ=255) tcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGTGAGTTGCGATAAAAAGCGt > 1:42124066‑M1/31‑68 (MQ=255) tcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:42882229‑M1/41‑1 (MQ=255) cccGAGACCCGCACGCGTCGACCTGGAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg > 1:18501756/1‑68 (MQ=255) ccGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:31272577/68‑1 (MQ=255) ccGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:438202/68‑1 (MQ=255) ccGAGACCCGCACGCGTAGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:40099743/68‑1 (MQ=255) catgaattcctccatccaaaaaaacgTGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:16748720‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:30378206‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:38886366‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:33472002‑M1/27‑68 (MQ=255) tgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTa < 1:27642479‑M1/44‑1 (MQ=255) tgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTa < 1:9232657‑M1/44‑1 (MQ=255) attcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg > 1:13293532‑M1/22‑67 (MQ=255) attcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:5182649‑M1/22‑68 (MQ=255) attcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:33805029‑M1/22‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:4743773‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:11552778‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:40926451‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:23373961‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:2414035‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:3774375‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:36471741‑M1/19‑68 (MQ=255) gCACGGGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAATAGCGTCAGGTAGGATCCg < 1:35776100/68‑1 (MQ=255) ctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:34183453‑M1/18‑68 (MQ=255) ctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:20898339‑M1/18‑68 (MQ=255) ctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:11188336‑M1/18‑68 (MQ=255) ctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:15515079‑M1/18‑68 (MQ=255) atccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa > 1:6473982‑M1/14‑68 (MQ=255) tccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAt > 1:10004714‑M1/13‑68 (MQ=255) caaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:20137676‑M1/11‑68 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:10427527‑M1/6‑68 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:8121057‑M1/6‑68 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:2800543‑M1/6‑68 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:37262208‑M1/6‑68 (MQ=255) cgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa > 1:12573335‑M1/3‑68 (MQ=255) cgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa > 1:15831793‑M1/3‑68 (MQ=255) cgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa > 1:17755456‑M1/3‑68 (MQ=255) cgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa > 1:18135042‑M1/3‑68 (MQ=255) | TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |