| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 438477 | NA (NA) | 12 (0.030) | 8/88 | NT | NA | noncoding (4/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 438479 | NA (NA) | noncoding (6/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 139 total aligned reads displayed.
CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438401‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:6358530/1‑68 tCTCAATCTGCGCGAGCAGGGCTTTAACAATGTGTAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:20208895/66‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:19604906/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:36943851/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:30582899/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:13685633/67‑1 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:28035699/1‑68 TCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:18052439/1‑67 CTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGC < 1:4164182/68‑1 CTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGC < 1:39605984/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:25168197/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:15762827/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:23496569/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:15014241/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:31359093/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:10906728/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:42279727/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCCTAATTTGTGGTTTTTACGTCGCA < 1:18376026/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATACCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:28022437/68‑1 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:19460148/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:469875/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:4390418/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:26832356/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:2696491/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:6426631/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:28900578/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:10470563/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:3809688/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:1554746/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:40533647/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:12881507/1‑66 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:11308901/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:20757167/1‑65 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:6346775/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:22359164/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:35759956/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:8722520/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:34047200/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:39841303/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:26439572/1‑68 CGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTag > 1:33462409/1‑65 CGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGc > 1:6885087/1‑66 CGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGA > 1:14857789/1‑67 CTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:1711369/46‑1 ACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAA > 1:12943049/1‑68 ACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAA > 1:17104087/1‑68 ACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCAT > 1:8240534/1‑47 GGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATT > 1:9388435/1‑68 GTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTATTAACCCCAAATT > 1:42286476/1‑67 ATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGG > 1:23156590/1‑67 CGCCCGTAATTTGTGGTTTTTACGTCGCTTCTGACCAGATGCGTCGTTAAAACCACAAATTACGGGCG > 1:38850280/1‑68 GGTTTTTACGTCGCATCTGACCAGATGCGACGTAAACACCACATATTACGGGCGCTATACCTTCACAT > 1:7816819/1‑68 ACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:7061137/1‑68 ACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:5380906/1‑68 ACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTAC‑GGCGATATACCTTCACATTGTTAAAG < 1:38504434/68‑1 CGTCGCATCTGACCAGATGCGCCGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:8188673/1‑67 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:32373119/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:25019396/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:34936757/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:42926442/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:1354009/68‑1 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC < 1:1241836/68‑1 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG > 1:30263672/1‑67 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG > 1:41217711/1‑67 GCATCTGGCCATATGCTACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCT < 1:22418033/68‑1 GCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCT < 1:23906953/68‑1 ATCTGACCAGATGCGACGTAAACACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:43274550/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:4098255/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:35858497/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:36395331/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:10279584/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCT > 1:25313473/1‑66 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCT > 1:36187303/1‑66 ttTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCT < 1:27664430/66‑1 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCT < 1:38132570/68‑1 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:12870568/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:38066574/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:41476771/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:28053289/1‑67 CTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTC > 1:26027425/1‑68 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:43163337/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:42372151/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:30376866/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:10394448/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:37571200/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:36612521/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:33799757/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:33258314/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:31436971/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:28329954/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:42111077/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:22161125/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:20271306/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:18242416/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:15556372/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:14955178/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:12307663/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:11155411/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTC > 1:22561490/1‑67 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTC > 1:40013149/1‑67 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438401‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |