| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 6 (0.010) | 4/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 185 total aligned reads displayed.
ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 ACGGGTGAAGCGGCAACTATCAGCGACGTCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:43256913/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:35976934/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:3781185/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:37699464/1‑68ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:1749310/1‑68ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:42010960/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:24231129/1‑68ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:36463914/68‑1 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:32868912/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:7266952/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:41539512/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:41068029/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:108957/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:1475932/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:5237234/1‑68 TGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG < 1:11501192/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA > 1:24986843/1‑68 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA > 1:40861636/1‑68 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:14151849/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:34896827/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:15692663/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:28858773/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:28335039/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:39242095/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:11785070/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:34153556/67‑1 GAAGCGGCAACTATCAGCGACGGCCGGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:40482599/67‑1 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:21810155/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:33764547/1‑68 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:21530231/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:31852387/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:10104854/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:33073956/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:13050257/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:743959/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:171110/1‑67 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:26191292/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:12509123/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:36835000/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:11214650/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:39420625/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:35186265/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:39797593/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:19514590/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:41710328/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:10430943/66‑1 TCAGGCATTTTAATTCTTTTCTCAGCCGGCTGACATGGCTCATCCGGCGGAGAAAAGAATTAAAATG > 1:11070264/1‑67 CAGGCATTTTAATTCTTTTCTCAGCCGGATGCCATGGCGCATCCGGCTGAGAAAAGAATTAATATG > 1:3386496/1‑66 CAGGCATTTTAATTCTTTTCTCAGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATG > 1:42923332/1‑66 AGCCGGTTGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:21068220/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:13502488/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:12403/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:5669173/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:38681998/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:8019202/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:34511592/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:25479367/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:39875022/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:13490970/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:38931156/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:18894468/1‑67 GCCGGATGACATGGCTCATCCGTCTGAGAATAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:32463608/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:20662817/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:9387461/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:8271302/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:11725108/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:14922074/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:5072077/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:21274493/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:21988195/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:40258033/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:25154388/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:37362044/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCAAGGCCGTC > 1:23770282/1‑68 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACTCGCGCCAGGCCGTC > 1:16324740/1‑67 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:8659576/1‑67 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:21133644/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:6818008/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:42806872/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:4713709/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:35616291/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:34447025/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:1258959/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:6998634/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:31070205/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:30198044/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:21026690/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:22374931/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:27706645/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:26843648/67‑1 GGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCT < 1:17885757/68‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:26038425/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:6055788/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:35627946/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:38455045/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:2978971/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:13815181/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:12121269/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCCCTGAT > 1:42299337/1‑68 ACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG > 1:7378740/1‑68 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |