| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 6 (0.010) | 4/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 577 total aligned reads displayed.
GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACG > CP009273/831619‑831752 | cGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:26999408‑M1/1‑67 (MQ=255) cGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:33073956‑M1/1‑67 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCCGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:12620767/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:8905017/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:22197772/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:11888166/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:30681160/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:37799163/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:7005093‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:39797593‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:38805776‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGGTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:40491592/68‑1 (MQ=255) cAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGcc < 1:31220688/67‑1 (MQ=255) aaCTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCAt < 1:31441720/68‑1 (MQ=255) cTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATg > 1:28428775/1‑67 (MQ=255) aTCAGGGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca > 1:42299337‑M2/1‑65 (MQ=255) aTCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca > 1:6055788‑M2/1‑65 (MQ=255) aTCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca > 1:2978971‑M2/1‑65 (MQ=255) tCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca < 1:11108651‑M2/67‑4 (MQ=255) tCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca < 1:13815181‑M2/67‑4 (MQ=255) tCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca < 1:12440372‑M2/67‑4 (MQ=255) gCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:36615779‑M2/68‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:35616291‑M2/67‑8 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:25207765‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:9387461‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:13334708‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccgg > 1:8659576‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:8039561‑M2/66‑8 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:32187132‑M2/68‑11 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:6754231‑M2/68‑11 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:25479367‑M2/68‑11 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtt < 1:41495578/68‑1 (MQ=255) ggCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCttt > 1:2025245/1‑68 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt > 1:43004496/1‑67 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:10061999/1‑67 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:11615799/1‑67 (MQ=255) tcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:14651133/2‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:34443799/1‑67 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:25131153/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:26632910/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:27492355/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:39593045/67‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:4713104/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:18274774/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:10330783/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatct < 1:22696371/68‑3 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:21271780/68‑1 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAcatggctcatccggctgagaaatgaattaaaatg > 1:12254357‑M1/1‑32 (MQ=255) cAGGCATTTTAATTCTTTTCTCACCCGGACGAGCCATGgcatccggctgagaaaagaattaaaatgcc > 1:33895670‑M2/1‑38 (MQ=255) cAGGCATTTGAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:19331082/1‑68 (MQ=255) aTTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAtt < 1:30303725/67‑1 (MQ=255) aTTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTc < 1:1672838/68‑1 (MQ=255) ttttAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTcc < 1:36886268/68‑1 (MQ=255) tAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGc > 1:6876274/1‑68 (MQ=255) tAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGc > 1:21719933/1‑68 (MQ=255) tAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGc > 1:5004174/1‑68 (MQ=255) aaTTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCa < 1:19526594/68‑1 (MQ=255) aaTTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCa < 1:5281892/68‑1 (MQ=255) ttCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATc < 1:5745298/68‑1 (MQ=255) ttCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATc < 1:7358415/68‑1 (MQ=255) ttCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATc < 1:18690794/68‑1 (MQ=255) ttCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATc < 1:3615054/68‑1 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:29119417/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:23865843/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:10702991/1‑68 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:29510876/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:33751776/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:28825415/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:33329611/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:24722604/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:39367921/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:41872920/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:7545227/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:43667232/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:15336362/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:30944061/68‑1 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTg > 1:15886474/1‑67 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:38631432‑M1/68‑59 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:40228846‑M1/68‑59 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:34511592‑M1/68‑59 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:8271302‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:4103701‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:20662817‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:14922074‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:37362044‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:1731262‑M1/1‑9 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGCCCt > 1:27959621/1‑68 (MQ=255) cGGATGAcatgggtcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcg < 1:34964280‑M1/67‑61 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgc < 1:42806872‑M1/68‑62 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgc < 1:21128305‑M1/68‑62 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcg < 1:1367625‑M1/67‑61 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcg < 1:21026690‑M1/67‑61 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:5472741/68‑1 (MQ=255) cGGAGGAGCCATGTCATCCGGCTTTTACCCCACCGCACTCTGAAATTCCTGCATCTTTATTGACCtt < 1:24390735/67‑1 (MQ=255) ggATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgct < 1:17885757‑M1/68‑63 (MQ=255) ggATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTcc < 1:29358933/68‑1 (MQ=255) ggATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTcc < 1:2319905/68‑1 (MQ=255) aTGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTccc > 1:328559/1‑67 (MQ=255) tGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgctgat > 1:38421756‑M1/1‑3 (MQ=255) tGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgctgat > 1:26038425‑M1/1‑3 (MQ=255) | GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACG > CP009273/831619‑831752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |