New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1092557NA (NA)13 (0.030)
+GC		 6/108 NT NA intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 = 1092559 NA (NA)intergenic (+274/+462) ycdU/serX putative inner membrane protein/tRNA‑Ser

TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGTCAGACCGTGAACGCAGTGAGCGGGCTGC                       >  1:18333395/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGAACGCAGTGAGCGGGCTGC                       >  1:13602575/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGC                       >  1:13652814/1‑67
  CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGTCAGGCCGTGAACGCTGTGAGCGGGCTGCCC                     >  1:25093405/1‑67
        CGGTCTGTCCAACTGGCGCCCGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC              >  1:38052541/1‑68
        CGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGCCCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC              >  1:2593949/1‑68
          GTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:22890270/1‑68
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGc            >  1:17547401/1‑66
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:10292656/1‑67
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:17701370/1‑67
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:37271765/1‑67
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:5595898/1‑67
                  AACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCG    >  1:29926466/1‑68
                   cCTGGCCCCCGCCAGTTGCACAGACCGTGAACGCCGTGCGCGGGCGGCCCGCAGGGCGAGCGAAGCGA   <  1:20679927/67‑1
                    CTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  1:13020738/68‑1
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.