| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 401 (0.760) | 16 (0.040) | 6/94 | NT | 5.1% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 254 (0.570) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 122 total aligned reads displayed.
GATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2640708‑2640634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCC > CP009273/2640664‑2640727 GATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGC > 1:30474836/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAACCGCGGCTGCTGGATAACGTTGGCA > 1:17162926/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGTATAACGTTGGCA > 1:17204401/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:40529215/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:10574294/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:19368895/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:39613959/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:20150155/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:38644030/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:21026376/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:38237820/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:37805760/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:2268553/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:23309014/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:35758322/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:35249113/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:35165655/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:25644829/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:321104/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:31344658/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:27193060/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:27433021/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:18928595/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:12026804/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:6502099/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:6298576/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:5633343/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:42975811/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:41696501/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:1531409/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:41696486/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:19063215/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCA > 1:40583523/1‑68 ATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACCCGGCTGCTGGATAACGTTGGCA > 1:18840635/1‑68 ATCTGCTGAATGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCAGGATAACGTTGGCA > 1:27298547/1‑68 TCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAG < 1:3069158/68‑1 TCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAG < 1:13123494/68‑1 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:29553028/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:302696/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:8889891/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:12590511/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:37566213/1‑68 TGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCC > 1:41450510/1‑68 GCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCG < 1:11887915/68‑1 CTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:37669588/1‑68 gGATTGACAGACCGTAAATGCCTCGATTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC < 1:41430828/66‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:33064467/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:37457176/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:11031442/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:13336316/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG < 1:24663413/68‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:15117172/1‑67 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:22166519/1‑67 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:1417159/1‑67 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC < 1:30273969/67‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC < 1:4971687/67‑1 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC > 1:31020097/1‑67 TGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGC < 1:24346077/67‑1 GATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGT < 1:7175372/68‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:30173246/67‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:41428534/67‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:24123614/67‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:25772664/67‑1 CAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGT < 1:12844902/67‑1 tcCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGG < 1:28599166/66‑1 CTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCA < 1:13923723/67‑1 CTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCA < 1:17302054/67‑1 CCAACCGCGGCGGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAC < 1:39227692/68‑1 CCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCGTTCGGTTAACAAGCGAGGCATTTACGGTCTGAC < 1:30203539/68‑1 gGCTGGATAACGTTGGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAT < 1:31301112/67‑1 TGCTGGATAACGTTGCCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAT < 1:7993386/68‑1 ccGGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCG > 1:33032529/3‑67 catCAGCCGCGTTTGGTTAACAAGCGATGCATTTAAGGTCTGACAATCAGCAGATCTTCAGCCGCGCC < 1:43379177/65‑1 catCAGCCGCGTTGGGTTCACAAGCGCGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCC < 1:40349613/65‑1 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:8263544/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:8003437/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:12473480/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:533370/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:18441348/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:13323328/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:19562765/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:38935191/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:27394311/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:2637211/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:22980978/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:23538428/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGG > 1:37524898/1‑68 GCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCATCAGCCGCGCCGG > 1:32485360/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTa > 1:6441701/1‑67 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:36367772/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:30181705/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:24297236/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:1919916/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:2211526/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:20460511/1‑68 AGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGT < 1:25906251/67‑1 GCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:36963871/1‑67 GCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTC > 1:29214976/1‑67 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCC < 1:29092190/68‑1 CGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGC < 1:18391481/67‑1 GATCTGCTGATTGTCAGACCGTAAATGCCTCGCTTGTTAACCAAACGCGGCTGCTGGATAACGTTGGCAGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2640708‑2640634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCC > CP009273/2640664‑2640727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |