| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 401 (0.760) | 16 (0.040) | 6/94 | NT | 5.1% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 254 (0.570) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 492 total aligned reads displayed.
TCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCC > CP009273/2640599‑2640727 | tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCCGCCGCGttt > 1:599269/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:11537143/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:7164656/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:2142940/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:33466711/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:30378098/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:15877752/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:23127235/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:15553770/1‑68 (MQ=255) gtcagaccgtaaatgcctcgcttgttaaccgaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg < 1:30203539‑M1/35‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:10081360/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:7210528/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:20082911/68‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:23763623/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:28948226/1‑68 (MQ=255) tCCCCACGCAGCAAGAAAAAGGAGAAAGGGCGCCGCTGCCAACGTTATCCAGCAGACGCGTTTGGTTa > 1:30732382/1‑68 (MQ=255) cACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa < 1:15026088/68‑1 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:9694768/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:30151814/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:25921329/1‑67 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg > 1:1238031/1‑68 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg > 1:42354069/1‑68 (MQ=255) cTGCAAGAAAAGGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTACCAAGCGa > 1:35817086/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:39642350/1‑68 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:2248485/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:30968018/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:4552995/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:37112876/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:14004588/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:32101432/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:16321623/68‑1 (MQ=255) ctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGTTAACAAGCGAGGCa < 1:39376812‑M2/20‑1 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:34155030/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:29497183/1‑68 (MQ=255) aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt < 1:41109959/66‑1 (MQ=255) aaaGGAGAAAGGGCGCGCCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAGTTAc > 1:36260604/1‑68 (MQ=255) aaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACg < 1:41396933/68‑1 (MQ=255) aaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACg < 1:28523225/68‑1 (MQ=255) tgagaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:35220955/67‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:24762205/1‑65 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:41511610/1‑65 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:33927826/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:10626303/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:37499632/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:25258601/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:24035246/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:17354108/66‑1 (MQ=255) gaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCt < 1:38054127/67‑1 (MQ=255) accaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg < 1:12844902‑M1/61‑1 (MQ=255) aaaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg > 1:29904914/1‑67 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:13644106/68‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:36711983/68‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:19207225/68‑1 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:42897709/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:1445577/1‑68 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:17288384/1‑67 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:21103068/1‑67 (MQ=255) gcgcGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa < 1:27273460/66‑1 (MQ=255) gcgcGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa < 1:13884052/66‑1 (MQ=255) CGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca < 1:11031442‑M1/68‑1 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca < 1:4971687‑M1/67‑1 (MQ=255) CGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagc < 1:11887915‑M1/68‑1 (MQ=255) tgctggataacgttgccagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt < 1:7993386‑M2/44‑1 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:41910927‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:25644829‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:543927‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:37805760‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:31474035‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:18928595‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:12026804‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:19368895‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:27524437‑M1/1‑68 (MQ=255) cAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCt > 1:18172528/1‑67 (MQ=255) aCGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTca < 1:3923621‑M2/68‑3 (MQ=255) aCGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTca > 1:19646768‑M2/1‑66 (MQ=255) aCGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTca < 1:8884498‑M2/68‑3 (MQ=255) cGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcag > 1:24123874‑M2/1‑65 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcag < 1:510790‑M2/67‑4 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcag < 1:23347292‑M2/67‑4 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcag < 1:13071752‑M2/67‑4 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTAAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATATTcag < 1:9234557‑M2/67‑4 (MQ=255) ttATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagcc < 1:27826462‑M2/68‑6 (MQ=255) aTCCAGCAGCCGCGTTTGGTTAACAAGAGAGGCATTTACGGTCGGACAATCAGCAGATCTTcagccgc < 1:8380548‑M2/68‑8 (MQ=255) ccggcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCcgcg > 1:33032529‑M2/13‑67 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:41718308‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:22249339‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:38424530‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:22095771‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:755027‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGATAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAACTTcagccgcg < 1:40452954‑M2/67‑9 (MQ=255) cagcagCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcgcc < 1:3554135‑M2/68‑11 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCgg > 1:13323328‑M2/10‑68 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCgg > 1:38935191‑M2/10‑68 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCgg > 1:18441348‑M2/10‑68 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCATCAGCCGCGCCgg > 1:32485360‑M2/10‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGgta > 1:6441701‑M2/8‑67 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:24297236‑M2/8‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:20460511‑M2/8‑68 (MQ=255) agcCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcgccct > 1:26610875‑M2/1‑54 (MQ=255) agcCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcgccc > 1:31245550‑M2/1‑54 (MQ=255) | TCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCC > CP009273/2640599‑2640727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |