New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3076151NA (NA)17 (0.050)
+ATTTCGCAGCAATCTGT		 3/78 NT NA noncoding (103/147 nt) REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences
?CP009273 3956062 = NA (NA)noncoding (3/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences

CATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3076111‑3076151
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCCGGAAAAGATGCGTCAGCATCGCATCC  >  CP009273/3956062‑3956092
                                         |||||||||||||||||                               
cccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGG                              <  1:39750616/58‑1
            CGATGCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGC           >  1:19157078/1‑68
                GCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC        >  1:11133407/1‑67
                GCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC        >  1:10348010/1‑67
                GCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC        >  1:40359262/1‑67
                GCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC        >  1:36298355/1‑67
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCCTCGCATCC  >  1:1083724/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:42471447/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:42191596/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:39367329/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:36956078/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:2788639/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:21190067/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:18210463/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:1585480/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:14626164/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:13890833/1‑68
                     CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC  >  1:11373574/1‑68
                                         |||||||||||||||||                               
CATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3076111‑3076151
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCCGGAAAAGATGCGTCAGCATCGCATCC  >  CP009273/3956062‑3956092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.