| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3076151 | NA (NA) | 17 (0.050) +ATTTCGCAGCAATCTGT |
3/78 | NT | NA | noncoding (103/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 3956062 = | NA (NA) | noncoding (3/36 nt) | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 634 total aligned reads displayed.
GCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGG > CP009273/3955995‑3956129 | aGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAg > 1:39803483/1‑67 (MQ=255) aaaGGGCAAAGCCATGTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGcc > 1:8888523/1‑68 (MQ=255) aaaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGcc > 1:19255205/1‑68 (MQ=255) aaaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGcc > 1:1160407/1‑68 (MQ=255) aaaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGcc > 1:37894516/1‑68 (MQ=255) aaaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGcc > 1:14366199/1‑68 (MQ=255) aaGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAgg < 1:8378637/65‑1 (MQ=255) aGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCgg < 1:33848099/68‑1 (MQ=255) aGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCgg > 1:38205422/1‑68 (MQ=255) ggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGaa > 1:32648830/1‑68 (MQ=255) gCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGa < 1:10293538/66‑1 (MQ=255) gCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGa < 1:21684844/66‑1 (MQ=255) gCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGa < 1:24045112/66‑1 (MQ=255) cAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGaaa < 1:21288437/67‑1 (MQ=255) gCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt > 1:43145498/1‑67 (MQ=255) gCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt > 1:6426502/1‑67 (MQ=255) gCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt > 1:19699933/1‑67 (MQ=255) cagcTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg < 1:40445630/65‑1 (MQ=255) cATCTGGCTAATCTGAAAGCGATTATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg < 1:17990067/68‑1 (MQ=255) cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAATTAATCAAGGCCGGAAAAGATGCg < 1:11087525/68‑1 (MQ=255) cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg < 1:24793328/68‑1 (MQ=255) cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg < 1:23807572/68‑1 (MQ=255) cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg < 1:34379104/68‑1 (MQ=255) cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg < 1:3863450/68‑1 (MQ=255) cTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCa > 1:12083197/1‑68 (MQ=255) ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgc < 1:18932059/68‑1 (MQ=255) ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgc > 1:26579751/1‑68 (MQ=255) ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgc > 1:32252123/1‑68 (MQ=255) ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgc > 1:17620075/1‑68 (MQ=255) cgatgctgacgcatcttatccggcctacgatttcgcagcaatctgtAGGCCGGATAAGATGCGTCAgc > 1:19157078‑M2/47‑68 (MQ=255) cGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGTAATAATCAAGGCCGGAAAAGATGCGTCAgca > 1:16944952/1‑67 (MQ=255) gAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcat < 1:32898171/67‑1 (MQ=255) gAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcat < 1:35179696/67‑1 (MQ=255) aaTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatc > 1:22303737/1‑67 (MQ=255) cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgcat < 1:6748497/68‑1 (MQ=255) cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgcat < 1:33308414/68‑1 (MQ=255) cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgcat < 1:9384235/68‑1 (MQ=255) tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgcatc < 1:5302416/68‑1 (MQ=255) cgcatcttatccggcctacgatttcgcagcaatctgtAGGCCGGATAAGATGCGTCAGCATCGCATcc > 1:18210463‑M2/38‑68 (MQ=255) cgcatcttatccggcctacgatttcgcagcaatctgtAGGCCGGATAAGATGCGTCAGCATCGCATcc > 1:39367329‑M2/38‑68 (MQ=255) cgcatcttatccggcctacgatttcgcagcaatctgtAGGCCGGATAAGATGCGTCAGCATCGCATcc > 1:42191596‑M2/38‑68 (MQ=255) aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCgg < 1:31170841/68‑1 (MQ=255) aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCgg < 1:23694553/68‑1 (MQ=255) aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCgg < 1:13621753/68‑1 (MQ=255) aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCg > 1:42644655/1‑67 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:36086347/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:20762501/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:37235718/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:33216131/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:15797000/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:35524238/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc > 1:31884650/1‑68 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:31505223/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:7345668/68‑1 (MQ=255) aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGc < 1:42459910/68‑1 (MQ=255) gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa < 1:4513297/66‑1 (MQ=255) gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa < 1:23018384/66‑1 (MQ=255) gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa < 1:41064651/66‑1 (MQ=255) gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa < 1:24524110/66‑1 (MQ=255) gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCa < 1:33518310/66‑1 (MQ=255) atgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACtt > 1:10584819/1‑68 (MQ=255) tgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACtt < 1:7780101/67‑1 (MQ=255) tgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACtt < 1:10007964/67‑1 (MQ=255) atgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTAc > 1:13003492/1‑67 (MQ=255) tgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTc < 1:2111276/68‑1 (MQ=255) ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa < 1:29139459/68‑1 (MQ=255) ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa < 1:16494538/68‑1 (MQ=255) ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa < 1:5745644/68‑1 (MQ=255) ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa < 1:28784905/68‑1 (MQ=255) ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa < 1:30495830/68‑1 (MQ=255) ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa < 1:27355777/68‑1 (MQ=255) ggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt < 1:40754064/67‑1 (MQ=255) ggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt < 1:37645046/67‑1 (MQ=255) gcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTaa > 1:41480720/1‑68 (MQ=255) aatgAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCa < 1:7183917/65‑1 (MQ=255) cGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACt < 1:34736450/68‑1 (MQ=255) cGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACt < 1:11352825/68‑1 (MQ=255) gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTcc < 1:5560966/66‑1 (MQ=255) gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTcc < 1:13941081/66‑1 (MQ=255) gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCa < 1:29781581/67‑1 (MQ=255) ataatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTGATTAATGCACTTCCAGCgg < 1:25980091/68‑1 (MQ=255) aatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc > 1:27773600/1‑68 (MQ=255) aatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc < 1:25255430/68‑1 (MQ=255) aatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc < 1:36189801/68‑1 (MQ=255) tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg < 1:25716988/68‑1 (MQ=255) tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg < 1:39603448/68‑1 (MQ=255) tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg < 1:15174951/68‑1 (MQ=255) tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg > 1:36913889/1‑68 (MQ=255) tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg < 1:12685867/68‑1 (MQ=255) aaGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTg < 1:27063388/68‑1 (MQ=255) aaGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTg < 1:26393338/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:35692440/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:41902116/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:2040669/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:23437516/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:39150542/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:4884246/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:14815072/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:28337900/68‑1 (MQ=255) aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg < 1:40272837/68‑1 (MQ=255) | GCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGG > CP009273/3955995‑3956129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |