| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3245517 | NA (NA) | 5 (0.010) | 3/106 | NT | NA | noncoding (94/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127793 | NA (NA) | noncoding (77/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3245448‑3245517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTC < CP009273/4127793‑4127727 TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA < 1:30571216/68‑1TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:4668567/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:22443130/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:19445076/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:29907657/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:6768416/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA < 1:17531421/68‑1TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:7458406/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:16226873/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:75736/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:238142/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA < 1:31681671/68‑1TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA < 1:32176666/68‑1TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:27983472/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:13400477/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:33197748/1‑68TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA < 1:12463768/68‑1TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA < 1:342907/68‑1TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:37117891/1‑68 CTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:23654391/1‑67 CTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:4990456/1‑67 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATC < 1:2866547/68‑1 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:39074808/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:26807443/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:40601450/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:23631132/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:42372949/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:22401162/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:18076468/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:6171831/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:15335559/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:8090723/1‑66 TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:34355040/1‑66 GACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCA > 1:29395324/1‑65 tGCGTAGGCCTGATAAGCGTAGCGCATCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCT < 1:14337572/67‑1 ctGATAAGCGTAGCGCATCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGG < 1:29408797/65‑1 GATAAGCGTAGCGCATCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCG < 1:2636842/68‑1 acAAGCGTAGCGCATCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCG < 1:2475084/65‑1 GTAGCGCATCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGG < 1:29241185/68‑1 CGCATCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGT > 1:15412011/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGGCGGATAAGGCGTTCAC > 1:10087371/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:30918502/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:11521268/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:35380915/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:34401685/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:893538/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:13384454/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:32427124/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:14938518/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:30774130/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:29540454/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:5340867/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:21378007/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:29085266/68‑1 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:4260517/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:39316048/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:39328512/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:9733880/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:43011732/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:40489320/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:43214429/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:835701/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:39377301/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:40161653/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:39604473/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:804008/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:39649124/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:4082620/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:5117219/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:21688472/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:10850431/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:11538397/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:12256451/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:12530932/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:14627155/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:15568835/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:16840423/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:17773716/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:18014413/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:18910821/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:2026101/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:20487086/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:38985774/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:23786702/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:24246608/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:25984797/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:26470095/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:2654599/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:28102654/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:31577219/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:32394605/1‑67 TCAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC > 1:37318952/1‑67 TCAGGCCTACGCAATCTATGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT < 1:28813275/68‑1 CAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTC < 1:25983191/68‑1 CAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTC < 1:7212051/68‑1 CAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTC < 1:33260658/68‑1 CAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACT > 1:40943305/1‑67 TCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3245448‑3245517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcAGGCCTACGCAATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTC < CP009273/4127793‑4127727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |