| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3245517 | NA (NA) | 5 (0.010) | 3/106 | NT | NA | noncoding (94/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127793 | NA (NA) | noncoding (77/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 912 total aligned reads displayed.
TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAA > CP009273/3245450‑3245584 | cAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGAt < 1:35026418/68‑1 (MQ=255) aaaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGAtt > 1:6458031/1‑68 (MQ=255) aCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGTGCATCTGGCGAtttt > 1:8377701/1‑67 (MQ=255) aCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGAtttt > 1:31238917/1‑67 (MQ=255) aCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGAtttt > 1:41911453/1‑67 (MQ=255) cATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgc < 1:32479922/68‑1 (MQ=255) cATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGAAGCGAATCTGGCTATTTTgc > 1:22004752/1‑68 (MQ=38) aTTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgc > 1:8972779/1‑67 (MQ=255) aCATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTg > 1:1239005/1‑67 (MQ=255) cATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtc < 1:10010224/68‑1 (MQ=255) cATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtc < 1:27503213/68‑1 (MQ=255) cATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtc > 1:38818568/1‑68 (MQ=255) aTAGATTGCTTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg > 1:35455696/1‑67 (MQ=255) aTAGATTGCATAACCCTCGGTGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGt < 1:19761565/68‑1 (MQ=21) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg > 1:23397770/1‑67 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg > 1:30071069/1‑67 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg > 1:13341253/1‑67 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGt > 1:21131547/1‑68 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGt < 1:24478392/68‑1 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGt < 1:39039313/68‑1 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGt < 1:15074374/68‑1 (MQ=255) aGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCt > 1:25630898/1‑68 (MQ=255) aGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCt > 1:38368144/1‑68 (MQ=255) gATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCtt > 1:26832995/1‑68 (MQ=255) gATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCtt > 1:6797948/1‑68 (MQ=255) gATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCtt > 1:11472575/1‑68 (MQ=255) ttGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTa < 1:19378693/67‑1 (MQ=255) cATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGc < 1:28834432/39‑1 (MQ=255) aaCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGcc < 1:42465983/68‑1 (MQ=255) aaCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGcc < 1:15635366/68‑1 (MQ=255) aaCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGcc < 1:32289585/68‑1 (MQ=255) aCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCt > 1:37079858/1‑68 (MQ=255) aCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCt < 1:40081630/68‑1 (MQ=255) aCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCt > 1:40346597/1‑68 (MQ=255) aCCCGCGCAGACAAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCt < 1:20495166/68‑1 (MQ=255) cccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCt > 1:29600533/1‑67 (MQ=255) cccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCt > 1:43460616/1‑67 (MQ=255) cccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCt > 1:10532163/1‑67 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCGTCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc < 1:8031206/68‑1 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc > 1:34352034/1‑68 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc > 1:9631236/1‑68 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc > 1:29841971/1‑68 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc > 1:26612667/1‑68 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc < 1:17685840/68‑1 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc > 1:23110018/1‑68 (MQ=255) gcAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCGGTCTTAGCGCGCCTTCACg > 1:5176493/1‑67 (MQ=255) aGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGc < 1:20173496/67‑1 (MQ=255) aGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGc < 1:8716993/67‑1 (MQ=255) aGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGc < 1:12983226/67‑1 (MQ=255) ccAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCAc < 1:16937395/66‑1 (MQ=255) ccAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACtt < 1:3789165/68‑1 (MQ=255) ccAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACtt < 1:14832635/68‑1 (MQ=255) ccAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACtt < 1:17979611/68‑1 (MQ=255) ccAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACtt > 1:33788846/1‑68 (MQ=255) ccAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACt < 1:26236535/67‑1 (MQ=255) ccAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACt < 1:7431753/67‑1 (MQ=255) cAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACttt < 1:39329180/68‑1 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta > 1:15952408/1‑68 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta > 1:27193934/1‑68 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta > 1:22461499/1‑68 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta > 1:4402953/1‑68 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta > 1:25084458/1‑68 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta > 1:7666281/1‑68 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta > 1:13763700/1‑68 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatt < 1:16324855/67‑1 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTtta < 1:18404008/65‑1 (MQ=255) tAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTtta < 1:3647894/65‑1 (MQ=255) aGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAt > 1:9291124/1‑68 (MQ=255) aGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAt > 1:27998898/1‑68 (MQ=255) aGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAt > 1:17451698/1‑68 (MQ=255) aGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCAC‑GCACTTTATTAAt > 1:584873/1‑67 (MQ=255) cGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:20843931/1‑67 (MQ=255) cGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:28574863/1‑67 (MQ=255) cGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:24144829/1‑67 (MQ=255) cGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:3164514/1‑67 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:10900817/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:28304363/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:14156258/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:5505263/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:30685787/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:4841314/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:30947363/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:36776302/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:17249884/1‑66 (MQ=255) gTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt > 1:3464447/1‑66 (MQ=255) cgcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa > 1:43012023/1‑68 (MQ=255) gcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa > 1:41544291/1‑67 (MQ=255) gcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa < 1:37381312/67‑1 (MQ=255) gcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa > 1:35960776/1‑67 (MQ=255) gcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa > 1:2385549/1‑67 (MQ=255) gcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa > 1:21443915/1‑67 (MQ=255) aTCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACg < 1:2922241/68‑1 (MQ=255) aTCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCATTGAACg > 1:22676962/1‑68 (MQ=255) tCaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccggataaggcgttcac > 1:39649124‑M1/1‑2 (MQ=255) tCaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccggataaggcgttcac > 1:4082620‑M1/1‑2 (MQ=255) tCaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccggataaggcgttcac > 1:18910821‑M1/1‑2 (MQ=255) caggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccggataaggcgttcactc < 1:7212051‑M1/68‑68 (MQ=255) caggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccggataaggcgttcactc < 1:33260658‑M1/68‑68 (MQ=255) cTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGaa < 1:11918493/68‑1 (MQ=255) cTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGaa < 1:3282106/68‑1 (MQ=255) | TGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAA > CP009273/3245450‑3245584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |