| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3375198 = | 517 (0.980) | 30 (0.070) | 6/94 | NT | 7.1% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 353 (0.800) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
Only 100 of 230 total aligned reads displayed.
CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3375273‑3375198‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG > CP009273/3375228‑3375293 CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:27744119/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:31279031/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC > 1:41157461/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCAAGCGCTGGCGTGATCATTTC > 1:11037303/1‑68CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTACAGCGCTGTCGTGATCATTTC > 1:5706352/1‑68 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA > 1:35156644/1‑68 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA > 1:24995282/1‑68 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA > 1:43292368/1‑68 TTTGCCGCCATCTTTTAGCTGACCATCGCTCACCGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAG < 1:40675005/68‑1 TTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAG < 1:13307389/68‑1 aTGCAGCCATCTTTTAGCTGACCATCGCTCAACGTTTCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:32914736/67‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:23183355/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:21426608/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:31987089/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:3142055/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:3055783/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:18984426/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:23755495/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:2838587/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:26977882/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:265016/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:26194825/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:35706461/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:38046231/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:38093067/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:40145273/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:17859071/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:40839959/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:15514753/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:4607429/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:14605229/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:13432243/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:5997703/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:6311309/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:7649023/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC < 1:8377791/68‑1 TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGAGCATTTCAGC < 1:10215598/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:20832092/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:3415735/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:2057872/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:3891730/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:19900346/68‑1 GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC < 1:22623941/68‑1 GCCGCCATCTTTTAGCTGACAATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC > 1:36113120/1‑66 CCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATATCAGC > 1:12314369/1‑65 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:33955155/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:31706933/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:29874702/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:36899313/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:17619734/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:11495242/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG > 1:24630854/1‑68 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCT < 1:28880607/67‑1 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCT < 1:21702533/67‑1 CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCT < 1:34709693/67‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:6470780/68‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:41774809/68‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:8618152/68‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:7154217/68‑1 GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:21533342/68‑1 GCCATCTTTTAGCTGACCATCGCGCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG < 1:37593194/68‑1 CCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG > 1:38329878/1‑67 CATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAA < 1:1599128/68‑1 TTTAAGCGGACCAGCGCTCAACGTTGCACCTACCAGCGCGGGCGTGATCATTTCAGCGCTGGAAGGT < 1:27987160/67‑1 cGCTGACCATCGCTCAACGTGGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC < 1:7764515/67‑1 AGCTGACCATCGCTCACCGTTGCACCTTCCAGCGCTGGCGGGATCATTTCACCGCTGGAAGGTGCAAC < 1:15148496/68‑1 AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC < 1:32570638/68‑1 AGCTGACCATCGCGCAACGTTGCACCTTCCAGCGCTGGCGTGATCATATCAGCGCTGGAAGGTGCAAC < 1:39493948/68‑1 GCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGA > 1:5889946/1‑58 TGACCCTCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT < 1:8023820/67‑1 TGACCATCGCTCAACGTTGCACCTACCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT < 1:2856741/67‑1 TGACCATCGCACACCGTTGCACCTACCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT < 1:42523293/67‑1 CATCGCTCAACTTTCCACGTTCCAGCGCTGGGGTGATCTTTTCCGCGCTGGAAGGTGCAACGTTGAGC < 1:25824667/68‑1 CATCGCTCAACGTTCCACCTTCCAGCGCGGGGGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGC < 1:18710828/68‑1 CTCAACGTTGCACCTTCCCGCGCTGGCGTTATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGG < 1:6766944/68‑1 CGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:2931407/68‑1 CGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC < 1:3244992/68‑1 ccGCGCGGGCGTGAGCATTTCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCG < 1:24092357/66‑1 GCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA > 1:39379982/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:11964469/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:8386687/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:10022393/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:1925140/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:4918633/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:43434866/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:15708983/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:41609479/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:37457723/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:33676404/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:22450642/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:2428052/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG > 1:25270298/1‑68 GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA < 1:20338860/66‑1 TGGAAGGTTCAACGTTGAGCGATGGTCATCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGT < 1:10876564/67‑1 TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAATGGTATTAAAATCGATGAAGTT < 1:28552711/68‑1 TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGT < 1:42042480/67‑1 TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGT < 1:26621556/67‑1 GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG < 1:42276181/68‑1 GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG < 1:16685847/68‑1 GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG < 1:7500672/68‑1 CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3375273‑3375198‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG > CP009273/3375228‑3375293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |