New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3622650 =695 (1.320)29 (0.060) 8/96 NT 5.5% coding (249/2736 nt) rbbA ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein
?CP009273 3622682 = 407 (0.900)coding (217/2736 nt) rbbA ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein

Only 100 of 778 total aligned reads displayed.

GACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGG  >  CP009273/3622585‑3622717
                                                                 |                                                                   
gccAATGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCCGCATCCAGGCGATGCGCGGGCAGACGTcgcg                                                                   <  1:31567655/66‑1 (MQ=255)
  cgcgcttgttctcgttcattaccggtgcccgcgtccttgaacagggcaatgtgatggtgctgggcgg                                                                  >  1:28511057‑M1/64‑67 (MQ=255)
  cAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCgcggc                                                                 <  1:39903298/68‑1 (MQ=255)
   aaGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCgcggcg                                                                >  1:30706241/1‑68 (MQ=255)
   aaGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCgcggcg                                                                >  1:13364114/1‑68 (MQ=255)
     ggTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAt                                                              >  1:22456572/1‑68 (MQ=255)
     ggTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAt                                                              >  1:7207437/1‑68 (MQ=255)
       tgtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAt                                                              >  1:41563734/1‑66 (MQ=255)
       tgtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAt                                                              >  1:29382544/1‑66 (MQ=255)
       tgtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAt                                                              >  1:9244950/1‑66 (MQ=255)
       tgtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATg                                                             <  1:4420209/67‑1 (MQ=255)
        gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:25901928/67‑1 (MQ=255)
        gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:888087/67‑1 (MQ=255)
        gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:18549641/67‑1 (MQ=255)
        gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:17677555/67‑1 (MQ=255)
        gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:16979610/67‑1 (MQ=255)
             agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:5608038/1‑68 (MQ=255)
             agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:24344532/1‑68 (MQ=255)
             agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      <  1:31830189/68‑1 (MQ=255)
             agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:29249520/1‑68 (MQ=255)
             agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:40881772/1‑68 (MQ=255)
                  tttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  >  1:7696429/1‑67 (MQ=255)
                  tttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  >  1:11973906/1‑67 (MQ=255)
                  tttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcg                                                   <  1:43456326/66‑1 (MQ=255)
                   ttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgcg                                                 <  1:11536847/67‑1 (MQ=255)
                   ttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCgcgc                                                <  1:4676851/68‑1 (MQ=255)
                        cccAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATc                                           >  1:28224142/1‑68 (MQ=255)
                         ccAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATc                                           <  1:9550872/67‑1 (MQ=255)
                         ccAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATc                                           <  1:32763344/67‑1 (MQ=255)
                         ccAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATc                                           >  1:13632585/1‑67 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGTGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:30486684/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:3325668/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:34526462/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:36733344/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      >  1:37163040/1‑67 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:39397655/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:10328793/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:21271418/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      >  1:13831062/1‑67 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:1252291/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:21662464/67‑1 (MQ=255)
                              cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgcc                                        <  1:43196789/65‑1 (MQ=255)
                                  gCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 <  1:6304304/68‑1 (MQ=255)
                                  gCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 <  1:20745499/68‑1 (MQ=255)
                                  gCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 <  1:15938688/68‑1 (MQ=255)
                                   cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:21034936/1‑67 (MQ=255)
                                   cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:32178611/1‑67 (MQ=255)
                                   cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:19253278/1‑67 (MQ=255)
                                   cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:35585511/1‑67 (MQ=255)
                                   cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:26690817/1‑67 (MQ=255)
                                   cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:6808592/1‑67 (MQ=255)
                                   cGGCATCCAGGCAATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:14751694/1‑67 (MQ=255)
                                    ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                <  1:19665024/67‑1 (MQ=255)
                                    ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                >  1:5141748/1‑67 (MQ=255)
                                      cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:16761613/67‑1 (MQ=255)
                                      cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:15233180/67‑1 (MQ=255)
                                      cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:34085220/67‑1 (MQ=255)
                                      cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:31187286/67‑1 (MQ=255)
                                      cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:26175734/67‑1 (MQ=255)
                                      cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAAGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:2549075/67‑1 (MQ=255)
                                        tCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATc                           <  1:810858/68‑1 (MQ=255)
                                          cAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATcac                         <  1:15652292/68‑1 (MQ=255)
                                          cAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATcac                         <  1:26896953/68‑1 (MQ=255)
                                          cAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATcac                         <  1:42502964/68‑1 (MQ=255)
                                            agggcaatgtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAt                       <  1:30114421‑M1/47‑1 (MQ=255)
                                              cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:14502704/1‑67 (MQ=255)
                                              cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:23180874/1‑67 (MQ=255)
                                              cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:23565351/1‑67 (MQ=255)
                                              cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:22092858/1‑67 (MQ=255)
                                              cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:27495161/1‑67 (MQ=255)
                                               gcaatgtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTg                     <  1:24016145‑M1/49‑1 (MQ=255)
                                               gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:18228893/68‑1 (MQ=255)
                                               gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:38634997/68‑1 (MQ=255)
                                               gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:8274804/68‑1 (MQ=255)
                                               gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCAACACATTGc                    <  1:12692310/68‑1 (MQ=255)
                                                   cgcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    >  1:18795661/1‑64 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGTGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:10662718/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACTTTGCCCTGt               <  1:24932334/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTg                <  1:33655949/67‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:4028868/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:27923465/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:41294550/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:3917944/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:37959418/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:35744135/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:11304379/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:13058422/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:28927280/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:32511280/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:20183715/68‑1 (MQ=255)
                                                    gcgGGCAGACGTCGCGGCGATGCTTCGGGGCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:3633842/68‑1 (MQ=255)
                                                    gcgGGCAGACGGCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:40580218/68‑1 (MQ=255)
                                                      gggCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTc             <  1:25221828/68‑1 (MQ=255)
                                                         ggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAAt          <  1:4193875‑M1/60‑1 (MQ=255)
                                                         ggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAAt          <  1:26509365‑M1/60‑1 (MQ=255)
                                                         ggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCGGTTCAAt          <  1:35089657‑M1/60‑1 (MQ=255)
                                                              tggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGAcgc     <  1:10022277‑M1/65‑1 (MQ=255)
                                                                gGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCgg   <  1:29802235‑M1/67‑1 (MQ=255)
                                                                 GCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCggg  >  1:27177202‑M1/1‑68 (MQ=255)
                                                                 GCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCggg  >  1:110456‑M1/1‑68 (MQ=255)
                                                                 |                                                                   
GACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGG  >  CP009273/3622585‑3622717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.