| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 351 (0.670) | 39 (0.090) | 12/94 | NT | 10.9% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 344 (0.780) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 624 total aligned reads displayed.
CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCT > CP009273/4047430‑4047563 | cGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA < 1:3602128‑M1/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCaaa < 1:13089267/67‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCaaa > 1:36509955/1‑67 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:40626487/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:27122946/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:19434179/68‑1 (MQ=255) cAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATc < 1:43344513/68‑1 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:12001646/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:34047448/1‑65 (MQ=255) tGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGAGTAAAACAGTTCGACGGGCAAATCCTGa > 1:15508609/1‑68 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:8644472/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:9443754/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:32806456/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:21908507/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:1672837/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:23272885/68‑1 (MQ=255) cGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa < 1:31684232/68‑1 (MQ=255) cGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:26161221/1‑68 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:41459708/1‑67 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:5496577/1‑67 (MQ=255) tGCATTTGCTAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac > 1:14650464/1‑66 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:22498763/68‑1 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:6161836/68‑1 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:4755158/68‑1 (MQ=255) cATTTGCGAATTACTCTCGGCAACCGTTGATTCAAACAGTTCGGCGGGCAAATCCTGAATCAACACt < 1:33150723/67‑1 (MQ=255) aTTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACtt > 1:25994688/1‑67 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:36750655‑M2/68‑6 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:37286622‑M2/68‑6 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:37141641‑M2/68‑6 (MQ=255) aGTACTCTCCGCTACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:31440797‑M2/67‑7 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACCGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg > 1:29743733‑M2/1‑61 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg > 1:26837317‑M2/1‑61 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg > 1:16445772‑M2/1‑61 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:2285404‑M2/67‑7 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcga > 1:28791223‑M1/1‑38 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcga > 1:1918190‑M2/1‑58 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:39740628‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:35645399‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:18874329‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:19611473‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:30596230/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:12581265/68‑1 (MQ=255) ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc < 1:10648146/68‑1 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc < 1:28085451/68‑1 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa < 1:661242/68‑1 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:32313567‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:15135897‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:35034945‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:27738412/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:11534546/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:41855704/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACATCCtgcccggcgaactgt > 1:7181163‑M2/1‑53 (MQ=255) ccGCAACCGTAGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:17097973‑M2/1‑53 (MQ=255) gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa > 1:8197920/1‑67 (MQ=255) gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAc < 1:8904763/68‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:34192954/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:38988606/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:17687996/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:27511595/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:21133277/67‑1 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAggttgtgttgattcaggatttgcccggcgaactgtttgaa > 1:29661425‑M1/1‑28 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAggcagtgttgattcaggatttgcccggcgaactgtttgaa > 1:21333400‑M1/1‑28 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc < 1:40129974‑M2/51‑4 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAccct > 1:15968144/1‑66 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:25258521/1‑68 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatc > 1:41136792‑M1/1‑26 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa > 1:30220688/1‑68 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa > 1:24791441/1‑68 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa > 1:25707152/1‑68 (MQ=255) gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg > 1:23819890‑M2/1‑42 (MQ=255) aTTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgcactgtttgaatcaacgg > 1:43510751‑M1/1‑21 (MQ=255) aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa > 1:13496038/1‑67 (MQ=255) aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa > 1:18278326/1‑67 (MQ=255) ttCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggt > 1:40024202‑M1/1‑20 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc > 1:31926958/1‑68 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc > 1:19983182/1‑68 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc > 1:39570846/1‑68 (MQ=255) aacCAGTTCGCCGGGCAAATCCTGAATCAACACTCCCtgcccggcgaactgtttgaatcaacggttgc > 1:42215777‑M2/1‑37 (MQ=255) aCAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcgg > 1:36315874‑M1/1‑15 (MQ=255) aCAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcgg > 1:15771096‑M1/1‑15 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACATCCtgcccggcgaactgtttgaatcaacggttgcgg > 1:4984531‑M2/1‑35 (MQ=255) cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg > 1:33471604/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:11823047/1‑68 (MQ=255) tCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaccggttgcggagagt > 1:7581794‑M1/1‑10 (MQ=255) tCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt > 1:3490346‑M1/1‑10 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcggaga > 1:23138245‑M2/1‑30 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt < 1:37806339/67‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt < 1:2420669/67‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt < 1:18755348/65‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt > 1:20866425/1‑68 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt > 1:33795620/1‑68 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:4272792‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:30786367‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:26544437‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:31283250‑M1/67‑59 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:14096420‑M1/67‑59 (MQ=255) gggCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttc > 1:9583260‑M1/1‑5 (MQ=255) gggCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttc < 1:20269303‑M1/68‑64 (MQ=255) gggCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttc > 1:38793649‑M1/1‑5 (MQ=255) gCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttcgc > 1:10190202‑M1/1‑3 (MQ=255) | CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCT > CP009273/4047430‑4047563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |