New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4047497351 (0.670)39 (0.090) 12/94 NT 10.9% coding (1142/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein
?CP009273 = 4047517 344 (0.780)coding (1122/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 530 total aligned reads displayed.

TTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047450‑4047584
                                                                   |                                                                   
 ttGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCt                                                                    >  1:38705639‑M2/1‑67 (MQ=255)
     gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc                                                                <  1:37286622‑M2/68‑6 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACCGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg                                                              >  1:29743733‑M2/1‑61 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg                                                              >  1:9545274‑M2/1‑61 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg                                                              >  1:18975077‑M2/1‑61 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg                                                              >  1:16445772‑M2/1‑61 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                                               <  1:2285404‑M2/67‑7 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                                               <  1:16996895‑M2/67‑7 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:26544437‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:31283250‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:2054368‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:4272792‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:27149581/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:30596230/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:232309/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:21243415/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:12581265/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:13307578/68‑1 (MQ=255)
          aCTCTCCGCAACCGTCGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggc                                                             >  1:39585820‑M2/1‑58 (MQ=255)
           ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc                                                          <  1:10648146/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:3533348/1‑68 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:4212729/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:28085451/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:3079065/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         >  1:6413784/1‑68 (MQ=255)
             ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        <  1:41712292/68‑1 (MQ=255)
             ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        <  1:38053437/68‑1 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt                                                      >  1:32313567‑M2/1‑53 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:25509372/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:39759724/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:5121090/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:8948372/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:23835979/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:34987380/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACATCCtgcccggcgaactgt                                                      >  1:7181163‑M2/1‑53 (MQ=255)
                 gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:8197920/1‑67 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:11801520/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:13553706/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:7754152/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:19990222/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:39398455/67‑1 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAccct                                                 >  1:15968144/1‑66 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:10291270/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:38984447/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:572017/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:43347987/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:25258521/1‑68 (MQ=255)
                    aCCGTTGATTAAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGTCCATCACCGt                                                 >  1:30302033/1‑68 (MQ=255)
                     ccGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaat                                                >  1:8833773‑M2/1‑47 (MQ=255)
                      cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:41032687/1‑68 (MQ=255)
                      cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:24791441/1‑68 (MQ=255)
                      cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:17801048/1‑68 (MQ=255)
                      cGTTGATCCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                                               >  1:26101093/1‑68 (MQ=255)
                         tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGc                                             <  1:14982189/67‑1 (MQ=255)
                           aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa                                           >  1:40085270/1‑67 (MQ=255)
                           aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa                                           >  1:18278326/1‑67 (MQ=255)
                            ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc                                         >  1:13094750/1‑68 (MQ=255)
                            ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc                                         >  1:20969035/1‑68 (MQ=255)
                               aaaCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtccccggcgaactgtttgaatcaacggttgc                                      >  1:15520175‑M2/1‑37 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:26259701/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:2199231/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:12021643/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:19609129/1‑68 (MQ=255)
                                  cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                   >  1:33471604/1‑68 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcggagagt                               >  1:28791223‑M2/1‑30 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt                                <  1:34049304/67‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt                                <  1:2420669/67‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:18755348/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:4767776/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt                               >  1:33795620/1‑68 (MQ=255)
                                      ccGCCGGGCAAATCCTGAATCAGCACTTCCTGCCCGGCGGCCATCAGCGTTAGCCGGCGGCTGgtgtg                               >  1:31903217/2‑67 (MQ=255)
                                         ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt                             >  1:32842318/1‑67 (MQ=255)
                                             gCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCCGCGGCAGGTGTTTTCCa                          >  1:36297895/1‑66 (MQ=255)
                                                aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:17293068/68‑1 (MQ=255)
                                                aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:29565244/68‑1 (MQ=255)
                                                aaTCCTGAATCAACACTTCCCGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:28310228/68‑1 (MQ=255)
                                                  tCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCTGGTGTTTTCCAGCTGgc                    >  1:35653924/1‑67 (MQ=255)
                                                   ccTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgcgc                  >  1:33088089/1‑68 (MQ=255)
                                                    cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:21609592/68‑1 (MQ=255)
                                                    cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:11347815/68‑1 (MQ=255)
                                                     tGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCAc                <  1:29965635/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:14530502/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:43580204/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:10016175/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:22582017/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:40629491/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:401521/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:36448680/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:23742026/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:27797785/1‑68 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:19200490/1‑67 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:15322427/1‑67 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:31525886/68‑1 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:26764102/68‑1 (MQ=255)
                                                             cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:27372957/1‑68 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       <  1:25751798/68‑1 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:41344731/1‑67 (MQ=255)
                                                               cTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       >  1:34202409/1‑67 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:36793401/1‑67 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGGTCGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:19843631/68‑1 (MQ=255)
                                                                   |                                                                   
TTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047450‑4047584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.