| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4143325 | 196 (0.370) | 15 (0.030) | 8/96 | NT | 7.3% | noncoding (51/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 4143336 | 213 (0.470) | noncoding (62/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
Only 100 of 651 total aligned reads displayed.
AAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAG > CP009273/4143259‑4143392 | gTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAg > 1:18560169/1‑68 (MQ=255) gTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAg > 1:40720643/1‑68 (MQ=255) tAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGt > 1:22300044/1‑68 (MQ=255) tAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGt > 1:10787346/1‑68 (MQ=255) tAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGt > 1:34912735/1‑68 (MQ=255) aaCACCAAAGGTGTAGGTCGGATAAGATGCGCAGGTATCGCATCCGACATTATTGCGGCACTGGAg < 1:3020017/66‑1 (MQ=255) aaCACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAg < 1:42141667/66‑1 (MQ=255) aaCACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAg < 1:3325415/66‑1 (MQ=255) cacCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg < 1:7342697/68‑1 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:34502558/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:2980660/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:17395825/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:33366229/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:13559133/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:35573150/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:6631521/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCAATGGAGTTTg > 1:28863585/1‑67 (MQ=255) ccAAAGGTGTAGGTCGGATAAGATGCGCGAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGc > 1:28579363/1‑68 (MQ=255) ccAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGc > 1:38708242/1‑68 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:42866870‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:8599308‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:22945691‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:24003549‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:24415467‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:26558294‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:3968984‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:32567373‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:39313210‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:10370182‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:38081291‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:21438036‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:11679530‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACAATATTTCGGCACAGCAGTTTGGCAAcag < 1:13887370‑M2/68‑4 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:30864323‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt < 1:17099436‑M2/67‑5 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:17902492‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:3998844‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:11381454‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:25145156‑M2/1‑63 (MQ=255) gtAGGTCGTATAATATGCGCAATTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgc > 1:16492957‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgc > 1:36126167‑M2/1‑62 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:9171217‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:22682963‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGGTTGGCAAcagtgccgca > 1:18177606‑M2/1‑57 (MQ=255) agcgcaAGTATCGCATCCGACAGTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatgtcgg > 1:11758287‑M2/2‑47 (MQ=255) gcgcAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatgtcggat > 1:12420133‑M2/1‑46 (MQ=255) ccgcaAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatgtcggat > 1:43074823‑M2/2‑46 (MQ=255) cAAGTATCGCACCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatgtcggatgcg > 1:27639818‑M2/1‑43 (MQ=255) aaGTATCGCACCCGACATTATTGCGGCACTGGAGTTTGGCAAccgggccgaaataatgtcggatgcg > 1:27953760‑M2/1‑42 (MQ=255) aTCCGACATTATTGCGGCACTGttgccaaactgcagtggcgcaataatgtcggatgcgatacgtgcgc > 1:16028439‑M1/1‑22 (MQ=255) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:2034978/68‑1 (MQ=31) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:5847866/68‑1 (MQ=31) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:24774216/68‑1 (MQ=31) cATTATTGCGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatctta > 1:37546608‑M1/1‑16 (MQ=255) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:6314686/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:43425705/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:7163820/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:33972540/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:32063271/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:25983759/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:29636344/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGCATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:4187950/68‑1 (MQ=25) attattGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGtt > 1:13362315/1‑68 (MQ=35) ttattGCGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttat > 1:14845814‑M1/1‑14 (MQ=255) attGCGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccg > 1:3628002‑M1/1‑12 (MQ=255) tGCGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgac > 1:21136400‑M1/1‑10 (MQ=255) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:38916627/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:27397657/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:31533474/1‑68 (MQ=35) cGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacct < 1:8130277‑M1/68‑61 (MQ=255) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCAtag > 1:35844976/1‑66 (MQ=25) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:17696494/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:28221875/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCg > 1:21645653/1‑68 (MQ=35) gCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:14394640‑M1/1‑6 (MQ=255) gCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:36716174‑M1/1‑6 (MQ=255) gCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:1526538‑M1/1‑6 (MQ=255) gCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:34267510‑M1/1‑6 (MQ=255) cACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:15996680‑M1/1‑5 (MQ=255) cACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:6116291‑M1/1‑5 (MQ=255) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:32681112/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:19414381/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:4731425/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:41559443/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:15675358/67‑1 (MQ=35) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca < 1:25871765‑M1/67‑64 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:7578948‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca < 1:10121103‑M1/67‑64 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:1315338‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:23480687‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:7988424‑M1/1‑4 (MQ=255) cTGttgccaaactgctgtgccgcaataatgtcggatgcgttacgtgcgcatcttatcctacctacacc < 1:18850812‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:35366518‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:37111261‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:15127158‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:25501069‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:19006424‑M1/68‑66 (MQ=255) tGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacct < 1:41334400‑M1/68‑67 (MQ=255) tGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacct > 1:21942026‑M1/1‑2 (MQ=255) ggAGTTTGGCAACAGTGCCGGATGCGGCGGGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:9498467/68‑1 (MQ=255) | AAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAG > CP009273/4143259‑4143392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |