| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4143325 | 196 (0.370) | 15 (0.030) | 8/96 | NT | 7.3% | noncoding (51/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 4143336 | 213 (0.470) | noncoding (62/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
Only 100 of 431 total aligned reads displayed.
AAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGT > CP009273/4143270‑4143403 | acggtgTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAc > 1:37587805‑M2/3‑67 (MQ=255) aGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAca < 1:6521473‑M2/68‑3 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:3012259‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:33292901‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:25501069‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:39085031‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:13416814‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:37111261‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:6136600‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:2142259‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:20115081‑M2/68‑4 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:3998844‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:29174955‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:18604682‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:19075874‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:23480687‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:2462548‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt < 1:10121103‑M2/67‑5 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:11381454‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:16027353‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:4149049‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:7988424‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt < 1:40221707‑M2/67‑5 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:4765183‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:721888‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag > 1:21632364‑M2/1‑63 (MQ=255) tgtAGGGCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:10767711‑M2/1‑63 (MQ=255) gtAGGTCGTATAATATGCGCAATTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgc > 1:16492957‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgc > 1:36126167‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgc > 1:35098013‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:22377896‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:9716975‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:2495779‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:20931347‑M2/1‑62 (MQ=255) gtAGGTCGGAAAAGATGCGCAAGTAACGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:39578894‑M2/1‑62 (MQ=255) aGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgcc > 1:35751185‑M2/1‑60 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:14944795‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:42746384‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:22682963‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:38132936‑M2/1‑57 (MQ=255) cGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaat > 1:3628002‑M2/1‑56 (MQ=255) aTAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataa > 1:27279688‑M2/1‑53 (MQ=255) tAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatg > 1:32673109‑M2/1‑52 (MQ=255) tAAGAAGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataat > 1:1173281‑M2/1‑52 (MQ=255) cAAGTATCGCACCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatgtcggatgcg > 1:27639818‑M2/1‑43 (MQ=255) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:34842972/68‑1 (MQ=31) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:27456477/68‑1 (MQ=31) aCATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAg > 1:7397979/1‑68 (MQ=33) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:33972540/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:29636368/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:25983759/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:17260812/68‑1 (MQ=35) ttattGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTg > 1:9109209/1‑68 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTggg < 1:30929057/68‑1 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTgg > 1:10346080/1‑67 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTTGGCa > 1:18285729/1‑68 (MQ=25) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:8399916/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:14813254/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:26861474/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:17823922/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:18096763/1‑68 (MQ=35) gCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:9345254/1‑67 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:28221875/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:43356583/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:32287928/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCg < 1:3682730/68‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCg > 1:4403943/1‑68 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCg > 1:41715059/1‑68 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:19414381/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:15675358/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGGGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:31842442/67‑1 (MQ=25) aCTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGttt > 1:3152640/1‑68 (MQ=35) aCTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGttt < 1:14216681/68‑1 (MQ=35) tGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGa < 1:17580984/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTTGGCAGCGTTTTAg > 1:25753392/1‑68 (MQ=11) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:28644171/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:12047319/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:7810498/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:7467292/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:6063857/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:39388330/68‑1 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGt < 1:42920234/67‑1 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGt < 1:35400040/67‑1 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGt > 1:13089888/1‑67 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:23295416/1‑68 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTT‑‑GCATCGTTTGAGTc > 1:5151159/1‑66 (MQ=11) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACt < 1:15959020/68‑1 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACt < 1:28019327/68‑1 (MQ=35) ttGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACt < 1:38370131/68‑1 (MQ=25) ggCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgt < 1:21859110/68‑1 (MQ=35) gCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtc > 1:42336824/1‑68 (MQ=37) cAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcg > 1:34271440/1‑68 (MQ=39) aaCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcgg > 1:13518542/1‑68 (MQ=40) aaCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcgg > 1:2437809/1‑68 (MQ=40) aaCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcgg > 1:4198783/1‑68 (MQ=40) aCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcggt < 1:13656254/68‑1 (MQ=40) aCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcggt < 1:38848154/68‑1 (MQ=40) aCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcggt < 1:40899561/68‑1 (MQ=40) aCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcggt < 1:23969966/68‑1 (MQ=40) aCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcggt < 1:22151864/68‑1 (MQ=40) | AAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGT > CP009273/4143270‑4143403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |