| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 569 (1.080) | 72 (0.170) | 14/90 | NT | 14.0% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 428 (1.010) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 804 total aligned reads displayed.
AATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAG > CP009273/4190007‑4190140 | ttttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTc > 1:30417759/1‑67 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacggaccgctagccacttttTTTc < 1:5819449‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:22561463‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:4690784‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:43393719‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:37010183‑M1/4‑1 (MQ=255) tcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCg < 1:24655249‑M1/5‑1 (MQ=255) ttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcc < 1:488181/68‑1 (MQ=255) cgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcc > 1:41003013‑M1/62‑68 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:23195374‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:23838571‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:31787443‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:2045779‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc < 1:34766486‑M1/9‑1 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc < 1:38797087‑M1/9‑1 (MQ=255) gCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcccccc > 1:11693635/1‑68 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:16766477‑M1/57‑66 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:17138264‑M1/57‑66 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:11111972‑M1/57‑66 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:37261041‑M1/57‑66 (MQ=255) aaTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCg < 1:36536840/67‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGGTTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:16620222/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:8424750/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:61633/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:33838145/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:41399326/68‑1 (MQ=255) gACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:39208242/1‑67 (MQ=255) aCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:27438604/1‑66 (MQ=255) aCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:1195942/1‑66 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:18698507/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:21772885/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:29653870/66‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt < 1:2584902/68‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt < 1:27987931/68‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:6523436/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:31055602/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:34416501/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:35124565/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:42955779/1‑68 (MQ=255) tGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTgggg > 1:15884447/1‑68 (MQ=255) aaCGCCTGATTTGTCGTACCTGGAGTCTTCCCTATCGCCCCCCGTCTGGTCTACATTAGGGGGGCGaa < 1:26812538/68‑1 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTGTGGGCTACATTTGGGGGGCGGAAAAAAGTg < 1:38043235‑M1/44‑1 (MQ=255) tttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg < 1:14557733/68‑1 (MQ=255) tttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTg > 1:5587587/1‑67 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:8909817‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:13292415‑M1/48‑1 (MQ=255) gcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc < 1:19571705‑M1/50‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:21092085/1‑68 (MQ=255) accgatagccacttttTTTCGCCCCCCGTGTGGTCTTCATTTGGGGGGCGGAAAAAAGTGGGTATCgg < 1:26385394‑M1/52‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGTAAAAAAGTGGctatggg < 1:21582627‑M1/52‑4 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCGGGTGTACATTTGGGGGGCGCAAAAAAGTGGCTATCgg < 1:28703438‑M1/52‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:12870281/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:43667517/68‑1 (MQ=255) aCCTGGAGTATTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:38473760/68‑1 (MQ=255) ccTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTg < 1:18189681/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:12393880/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:8072271/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:36118918/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc < 1:17405570/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:19081858/1‑68 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:36715230/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:14882900/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:4060995/68‑1 (MQ=255) tGGAGGCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:24121134/68‑1 (MQ=255) gAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGGGCgtg > 1:13961862/1‑68 (MQ=255) gAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAACGGTGCgtg > 1:13664515/1‑68 (MQ=255) ggTCTTCCCGTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:19318775/2‑68 (MQ=255) aGTCTTCCCTTTTGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:28378067/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:27733674/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:33452039/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:7548051/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:37538411/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:24938721/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg < 1:2007742/67‑1 (MQ=255) gTCTTCCCTTTGGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:17859864/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:42658633/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:9402488/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:3954028/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa > 1:32213065/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:23507421/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:25370108/1‑68 (MQ=255) cTTCCCTTTCGCCCGCCGTCTGGTCTTCATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:10052489/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAATAAGTGGCTATCGGTGCGTGTAt < 1:3251710/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:32866007/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:10731809/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:15417718/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:20807663/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:691180/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:2215526/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:5357393/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:33092297/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCGGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:9203053/67‑1 (MQ=255) ttCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGc < 1:7865848/68‑1 (MQ=255) tCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa < 1:42285109/68‑1 (MQ=255) tCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa < 1:29087130/68‑1 (MQ=255) cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:1639060/1‑68 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg < 1:35546675/68‑1 (MQ=255) cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:41927375/1‑68 (MQ=255) cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:7211964/1‑68 (MQ=255) TTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgag > 1:39767683‑M1/1‑68 (MQ=255) | AATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAG > CP009273/4190007‑4190140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |