| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 569 (1.080) | 72 (0.170) | 14/90 | NT | 14.0% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 428 (1.010) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 832 total aligned reads displayed.
CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 | cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaa < 1:5462439/68‑1 (MQ=255) atacacgcaccgatagccactttttttcgccccccaaatgtagcccagacggggggcgaaaAAAAGt < 1:41553965‑M2/6‑1 (MQ=255) tacacgcaccgatagccactttttttcgccccccaaaagtagaccagacggggggcgaaaAAAAGTgg < 1:9239179‑M2/8‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:21969569/68‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:23875362‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:18062023‑M1/48‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAt < 1:32983240/67‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:5147075/1‑68 (MQ=255) gTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCg < 1:39928184/68‑1 (MQ=255) accgatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCg < 1:29553318‑M2/14‑1 (MQ=255) accgatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCg < 1:32400514‑M2/14‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTGTGGTCGACATTTGGGGGGCGAAAAAAAGTGGctatggg < 1:684485‑M1/52‑4 (MQ=255) ccgatagccactttttttcgccccccaaatgtacccccgccggggggcgaaaAAAAGTGGCTATCGGt < 1:7627656‑M2/16‑1 (MQ=255) ccgatagccactttattacgccccccaaatgacgaccagacggggggcgaaaAAATGTGGCTATCGGt < 1:895166‑M2/16‑1 (MQ=255) cccatagccacttttttacgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGt < 1:21582627‑M2/16‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:22787108/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:39190623/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:11927566/68‑1 (MQ=255) ccTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTg < 1:33242851/68‑1 (MQ=255) gatagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGc < 1:19571705‑M2/18‑1 (MQ=255) gatagccacattttttcgccccccacatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGc < 1:1225521‑M2/18‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:37709294/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:34110889/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc < 1:14795007/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:14326724/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:13540347/1‑68 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:36905555/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:36619760/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:42290811/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:27046658/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:6522233/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:3072431/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:166329/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:25359516/68‑1 (MQ=255) ggAGTTTCCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATTGGTGCgt < 1:18953445/68‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:10716833/68‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:23274926/68‑1 (MQ=255) gAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGGGCgtg > 1:13961862/1‑68 (MQ=255) agccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAATAAAGTGGCTATCGGTGCgtg < 1:17315445‑M1/58‑1 (MQ=255) ggTCTTCCCGTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:19318775/2‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTGTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:4402071/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:33485756/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:16320277/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:7363816/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg < 1:2007742/67‑1 (MQ=255) gTCTTCCCTTTGGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:17859864/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:43247402/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:41068079/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACAATTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:8698620/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCGACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa > 1:27587019/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:2647603/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:10987727/1‑68 (MQ=255) cactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:35963325‑M2/24‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:35396527‑M2/24‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:32603157‑M2/24‑1 (MQ=255) cTTCCCTTTCGCCCGCCGTCTGGTCTTCATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:10052489/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:36270460/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:16987197/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:24925569/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:22251928/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:42835017/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:20807663/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:5694466/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:27824964/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:13229253/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:7950077/67‑1 (MQ=255) ttCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGc < 1:17581088/68‑1 (MQ=255) tttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCa < 1:20449158‑M2/27‑1 (MQ=255) tttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg < 1:34826545‑M1/65‑1 (MQ=255) tttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg < 1:8151406‑M1/65‑1 (MQ=255) cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:114289/1‑68 (MQ=255) TTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:38088479‑M1/1‑61 (MQ=255) TTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgag > 1:24103401‑M1/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACTTTTGGGGGGCGAAATAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:34472792‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:28649247‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:15669886‑M1/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:6196873‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:43494397‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:21271121‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:3215762‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:12829675‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:37123848‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGGAGgagaga < 1:31468256‑M1/68‑2 (MQ=255) CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:23607457‑M1/66‑1 (MQ=255) CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt < 1:15215727‑M1/68‑1 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:28311128‑M1/1‑68 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:24706973‑M1/1‑68 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt < 1:38452596‑M1/68‑1 (MQ=255) CGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt < 1:29960917‑M1/66‑1 (MQ=255) cTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAtt > 1:24405211/1‑67 (MQ=255) atatGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCAGt > 1:7081950/4‑68 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:31817853/1‑67 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:28927113‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:40628808‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:39570954‑M2/11‑66 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc < 1:38797087‑M2/58‑1 (MQ=255) gggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt < 1:25869338‑M2/59‑1 (MQ=255) gggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt < 1:37389878‑M2/59‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:4726509‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:4193983‑M2/63‑1 (MQ=255) | CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |