| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4328027 = | 239 (0.450) | 16 (0.040) | 7/96 | NT | 5.7% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 325 (0.720) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
Only 100 of 393 total aligned reads displayed.
TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 | tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:26452983/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:1131466/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:19077687/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:36634178/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:38803388/68‑1 (MQ=255) gactgaaattattgacgttatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:42043108‑M1/66‑68 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:24788523‑M1/66‑66 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:12676427‑M1/66‑66 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:10215868‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:9322574‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:19811505‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:30424106‑M1/65‑67 (MQ=255) aCATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGt > 1:28030844/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:22373198/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:5040527/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:4424056/1‑68 (MQ=255) ttgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGtt > 1:25834963/1‑68 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACa < 1:17037777/66‑1 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACa < 1:11780637/66‑1 (MQ=255) ccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGCGTTATGTTATTTAAAcaatttcg < 1:27233979‑M1/26‑4 (MQ=255) aaaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCa < 1:31274457/67‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:13689288/68‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:10015130/68‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:5500643/68‑1 (MQ=255) cGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCgg > 1:13525180/1‑68 (MQ=255) tgcgtgaaagcgtaaccactattccgctgaaGGCGTTATGTTTTTTAAACAATTACGCCTTCAGCg < 1:28553575‑M1/35‑1 (MQ=255) gCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATa > 1:4086727/1‑68 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGt > 1:3912457/1‑68 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGt > 1:3720878/1‑68 (MQ=255) aTACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg < 1:2829599/68‑1 (MQ=255) aTACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg < 1:33200350/68‑1 (MQ=255) aTACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg < 1:21731976/68‑1 (MQ=255) aTACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg > 1:38009070/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:29655598/1‑68 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:980237/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:12312931/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCAGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:20449472/1‑67 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:31090743/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:15937095/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:2688950/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:10687513/1‑66 (MQ=255) aaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCt < 1:5794636/68‑1 (MQ=255) aaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCt < 1:25462164/68‑1 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:3989697/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:2301438/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:15282588/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:18022274/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:37835549/1‑68 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:19510284/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:11952729/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:1148024/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGAtt > 1:39411344/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:38447397/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:26150193/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:6739136/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:33494177/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:13906003/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:21865653/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:16575993/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:27421775/1‑67 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:23614642/67‑1 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:29318697/67‑1 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCAc < 1:6463327/68‑1 (MQ=255) tAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACg < 1:43474705/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:6240640/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:14120778/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:43109378/68‑1 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:32598042/1‑68 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:10845711/1‑68 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:17454557/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:18421433/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:10412979/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:24489668/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:7661701/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:34595406/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:34021055/1‑68 (MQ=255) gctgaaGGCGTAATGTTATTTTAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:42615737‑M1/62‑1 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGATTAGTGGTTACGCTTTCACGCACAt < 1:1567798‑M1/62‑1 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:30646967‑M1/62‑1 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:29433765‑M1/62‑1 (MQ=255) ccAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac < 1:4124585/66‑1 (MQ=255) ccAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt > 1:40241597/1‑68 (MQ=255) cAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:3499800/67‑1 (MQ=255) cAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:23958369/67‑1 (MQ=255) cAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:22090488/67‑1 (MQ=255) tgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:24933208‑M1/63‑1 (MQ=255) tgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:27085104‑M1/63‑1 (MQ=255) ggcggcGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc > 1:8663084/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:37475781/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:35312354/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:22632317/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:14664086/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:16289788/1‑67 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:7057540/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:31833536/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:14241208/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:9575752/1‑68 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:21350349‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:823420‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:13077674‑M1/1‑67 (MQ=255) | TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |