| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4375165 = | 608 (1.150) | 22 (0.050) | 11/90 | NT | 5.3% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | CP009273 | 4375192 = | 304 (0.720) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
Only 100 of 834 total aligned reads displayed.
GCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCC > CP009273/4375099‑4375232 | gCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATg > 1:22901194/1‑67 (MQ=255)cctgatttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGc > 1:10639499‑M1/67‑68 (MQ=255)cctgatttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGc > 1:15554315‑M1/67‑68 (MQ=255) ctgatttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGcc > 1:33422873‑M1/66‑68 (MQ=255) ctgatttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGcc > 1:18070862‑M1/66‑68 (MQ=255) gATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGcc < 1:12968677/67‑1 (MQ=255) gatttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCt > 1:20240748‑M1/64‑68 (MQ=255) gatttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCt < 1:34837331‑M1/5‑1 (MQ=255) tttACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCt < 1:1468465/67‑1 (MQ=255) tttgatgttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTAt > 1:4036971‑M1/62‑68 (MQ=255) tttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTa < 1:32719145‑M1/6‑1 (MQ=255) tttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTa < 1:43611554‑M1/6‑1 (MQ=255) tttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTAt > 1:29540718‑M1/62‑68 (MQ=255) tttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTAt > 1:29952610‑M1/62‑68 (MQ=255) tttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTAt > 1:22375572‑M1/62‑68 (MQ=255) tttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTAt > 1:14075202‑M1/62‑68 (MQ=255) ttACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTAt < 1:26228792/68‑1 (MQ=255) ttACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTAt < 1:28730389/68‑1 (MQ=255) ttcatcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTATc < 1:21429442‑M1/8‑1 (MQ=255) tACCAGAACTATTGCCCCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATc < 1:74228/68‑1 (MQ=255) atcttcggttattgccgggtcccggctggtgtcatccataacatttcctgtctttacGCCCTATCGTc > 1:888525‑M1/58‑68 (MQ=255) aGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCt > 1:8594774/1‑68 (MQ=255) aCTATTGCAGCAGTGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:30463907/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTCTCGTCTAcc < 1:19889219/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTa > 1:42655281/1‑66 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTa > 1:26603157/1‑66 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTa > 1:25031613/1‑66 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:27902635/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:21910398/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:22565716/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:38870175/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:31869142/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:30932228/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAcc < 1:15916932/68‑1 (MQ=255) aCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAc < 1:3602638/67‑1 (MQ=255) cTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTa > 1:39573085/1‑65 (MQ=255) ttGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGAc < 1:5548856/68‑1 (MQ=255) ttGCAGCAGAGTGCCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGAc < 1:36935344/68‑1 (MQ=255) tGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACg > 1:27361798/1‑68 (MQ=255) tGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACg > 1:34400046/1‑68 (MQ=255) agcagAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATa > 1:19018947/1‑68 (MQ=255) agagTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg > 1:40711501/1‑67 (MQ=255) agagTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg > 1:7903752/1‑67 (MQ=255) agagTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg > 1:29286199/1‑67 (MQ=255) agagTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg > 1:25927313/1‑67 (MQ=255) agagTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg > 1:20596947/1‑67 (MQ=255) gTGGCCAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCg < 1:9746845/67‑1 (MQ=255) gTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACGTGACGATAGGGca < 1:31638179/67‑2 (MQ=255) gTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGc < 1:5908608/66‑1 (MQ=255) gTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGt > 1:42948214/1‑68 (MQ=255) gTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCAATCGGCTACCTGACGATAggg < 1:13384793/65‑1 (MQ=255) ggCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTaa > 1:37970149/1‑68 (MQ=255) gCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTaa < 1:41370102/67‑1 (MQ=255) aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAg > 1:11046045/1‑67 (MQ=255) aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGa < 1:23723880/68‑1 (MQ=255) aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGa < 1:27086881/68‑1 (MQ=255) aaaaTCCGCAGTGGGCGGTGGGATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACa > 1:13713886/1‑68 (MQ=255) aaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACa < 1:16087181/68‑1 (MQ=255) aaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAg < 1:4168135/68‑1 (MQ=255) tgtcatccattacatttcctgtctttacGCCCTATCGTCTGCCGGACGATAGGGCGGAAAGACAGGaa < 1:2842121‑M1/40‑1 (MQ=255) cGCCGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt < 1:3670298/68‑1 (MQ=255) cGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt < 1:19448629/68‑1 (MQ=255) cGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt < 1:40042856/68‑1 (MQ=255) cGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt < 1:9404973/68‑1 (MQ=255) tccataacatttcctgtctttacGCCCTATCGTCTACCTGGCGATAGGGCGTAAAGACAGGAAATGtt < 1:11649212‑M1/45‑1 (MQ=255) aGTTGGCGGTGGTATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:4840028/67‑1 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:10100028/67‑1 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:43169013/67‑1 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:25341973/67‑1 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:14411387/67‑1 (MQ=255) gTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGtt < 1:16420090/67‑1 (MQ=255) cGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGa < 1:6186827/67‑1 (MQ=255) cGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGa < 1:17872683/67‑1 (MQ=255) acatttcctgtctttacGCCCTATCGTCTACCTGACGATAGGGCGTATAGACAGGAAATGTTATGGAt < 1:8286444‑M1/51‑1 (MQ=255) ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac > 1:28177295/1‑67 (MQ=255) ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac > 1:2425134/1‑67 (MQ=255) ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac < 1:31245325/67‑1 (MQ=255) ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac > 1:35099798/1‑67 (MQ=255) ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac > 1:39146067/1‑67 (MQ=255) aaTAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGATATGTTATGGATGACAcc > 1:25652575/1‑68 (MQ=255) tAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg < 1:12147002/68‑1 (MQ=255) tAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg < 1:12496619/68‑1 (MQ=255) aaCCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg > 1:30723557/1‑67 (MQ=255) aaCCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg > 1:32419760/1‑67 (MQ=255) aCCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGcc < 1:38264583/68‑1 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGCCACCAGCCg > 1:42217031/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:24695638/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:37456408/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:18613681/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:33869983/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:15107473/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:23379389/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:11845871/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:27640728/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:21012418/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:35646838/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:36381935/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:17361446/1‑68 (MQ=255) cGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCggg < 1:7044156/68‑1 (MQ=255) tGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAcc < 1:5121307/68‑1 (MQ=255) | GCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCC > CP009273/4375099‑4375232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |