| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4468828 | NA (NA) | 6 (0.010) | 5/92 | NT | NA | intergenic (+122/+23) | rraB/yjgM | protein inhibitor of RNase E/putative acetyltransferase |
| ? | CP009273 | = 4468837 | NA (NA) | intergenic (+131/+14) | rraB/yjgM | protein inhibitor of RNase E/putative acetyltransferase | |||||
Only 100 of 686 total aligned reads displayed.
CCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGT > CP009273/4468761‑4468895 | cGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGa < 1:22972773/68‑1 (MQ=255) cGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGa < 1:8283471/68‑1 (MQ=255) cGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGa < 1:22243328/68‑1 (MQ=255) ggATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAg < 1:886963/68‑1 (MQ=255) aTAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGt < 1:41815774/67‑1 (MQ=255) tAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTg > 1:27097218/1‑68 (MQ=255) aaGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGa < 1:35221381/68‑1 (MQ=255) gCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGaaa > 1:17363123/1‑66 (MQ=255) gCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAac > 1:28338198/1‑67 (MQ=255) gCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAac > 1:37420873/1‑67 (MQ=255) gCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAac > 1:1000308/1‑67 (MQ=255) gCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAac > 1:14318494/1‑67 (MQ=255) gCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAac > 1:43648439/1‑67 (MQ=255) gCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCCAGTTGAac > 1:32472829/1‑67 (MQ=255) cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:30015026‑M2/68‑2 (MQ=255) cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:28616393‑M2/68‑2 (MQ=255) ttCATGGCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgc > 1:40335395‑M2/1‑65 (MQ=255) cATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGtgttcagctcgcgg > 1:22722412‑M1/1‑54 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcggg > 1:29629220‑M2/1‑62 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:14600607‑M2/67‑6 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:13744879‑M2/67‑6 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:27561728‑M2/67‑6 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:1814144‑M2/67‑6 (MQ=255) tGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggc < 1:16316907‑M2/68‑8 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcatt > 1:37237813‑M2/1‑58 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcatt > 1:37659393‑M2/1‑58 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:43369748/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:26470107/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:37831933/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:40680983/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:2034399/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:2072187/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt > 1:22108688/1‑68 (MQ=255) caTCCGGCATAAACAAAACGTACGGTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:6680227/68‑1 (MQ=255) aTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAttttt > 1:36012339/1‑68 (MQ=255) tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttttt > 1:23945693/1‑68 (MQ=255) ccGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAttttttt > 1:38897430/1‑68 (MQ=255) ccGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAttttttt > 1:19619255/1‑68 (MQ=255) aTAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTagag < 1:34670046/67‑1 (MQ=255) aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgc > 1:15657764/1‑68 (MQ=255) aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgc < 1:18538720/68‑1 (MQ=255) cAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgc > 1:11731263/1‑67 (MQ=255) acgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAAc > 1:13290512/1‑68 (MQ=255) acgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAAc > 1:3630848/1‑68 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:40036169/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa > 1:10154049/1‑68 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:7526998/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:6146598/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa > 1:24910516/1‑68 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:7965637/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:35651956/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:4964016/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa > 1:5649668/1‑68 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa > 1:5403713/1‑68 (MQ=255) tacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACAt > 1:20071811/1‑67 (MQ=255) ggtgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGc < 1:16796764/66‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:31583086/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:39795494/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:19134930/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:252411/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:42643007/68‑1 (MQ=255) tAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTc < 1:18857721/68‑1 (MQ=255) tAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTc > 1:24410322/1‑68 (MQ=255) aaTGTTCGAATGCCCGCGAGTTGAACCCGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTc > 1:30703833/1‑67 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:9413598/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca < 1:10378833/68‑1 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:15381146/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:28084280/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:12829534/1‑68 (MQ=255) ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCATCATACGCACTTCACaa > 1:31106555/1‑67 (MQ=255) ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACaa > 1:31979156/1‑67 (MQ=255) ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACaa > 1:16092414/1‑67 (MQ=255) ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACATCACaa > 1:11032107/1‑67 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:2943383/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:39272013/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:33432656/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:42856061/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:41520255/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGATCGCGCAACATCCGCACTTCACAATCGa < 1:32898757/68‑1 (MQ=255) aaTGCCCGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtg > 1:11341978‑M1/1‑10 (MQ=255) aaTGCCCGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtg > 1:25982590‑M1/1‑10 (MQ=255) aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGAc > 1:2132517/1‑68 (MQ=255) aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCAGCACTTCAGAATCGAc > 1:34265876/1‑68 (MQ=255) tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACAt > 1:40991837/1‑68 (MQ=255) tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACAt > 1:17864202/1‑68 (MQ=255) tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACAt > 1:6943807/1‑68 (MQ=255) gCCCGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgaca < 1:32276161‑M1/68‑62 (MQ=255) cccGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacat > 1:33905016‑M1/1‑6 (MQ=255) cccGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacat > 1:23423976‑M1/1‑6 (MQ=255) cccGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacat > 1:1487053‑M1/1‑6 (MQ=255) cccGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacat > 1:12055535‑M1/1‑6 (MQ=255) ccGCGtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgaca < 1:25740014‑M1/66‑62 (MQ=255) ccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATgg < 1:20920560/67‑1 (MQ=255) gcgtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacatgaa < 1:38558868‑M1/68‑66 (MQ=255) gcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGccc < 1:8662718/68‑1 (MQ=255) gtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacatgaatg < 1:12536210‑M1/68‑68 (MQ=255) gtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacatgaatg < 1:10661793‑M1/68‑68 (MQ=255) gtgttcaactcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacatgaatg < 1:38201255‑M1/68‑68 (MQ=255) gAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGt < 1:12094803/68‑1 (MQ=255) gAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGt < 1:42251247/68‑1 (MQ=255) | CCGGATAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGT > CP009273/4468761‑4468895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |