| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 426424 = | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (1/98 nt) | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 4460260 | NA (NA) | noncoding (63/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 834 total aligned reads displayed.
GAAGTACAACCCATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTGTTG > CP009273/426357‑426491 | tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:32874896‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:20042778‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:17264486‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:16834645‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:10046768‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:15370790‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:8057407‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:37270434‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:3456742‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:12042479‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:669313‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagg > 1:10988353‑M1/68‑68 (MQ=255)tcatgccggatgcggcgtaaatgacttatccgtccaacaaattcaataaattgcaggaatcacgtagg > 1:41950430‑M1/68‑68 (MQ=255) atgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagGcc > 1:21940557‑M1/66‑68 (MQ=255) atgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagGcc > 1:38906882‑M1/66‑68 (MQ=255) tgccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagGCCt > 1:41584933‑M1/65‑68 (MQ=255) ccggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagGCCTGa < 1:21306947‑M1/6‑1 (MQ=255) aCAACCCATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCt < 1:19523268/66‑1 (MQ=255) cggatgcggcgtaaatgccttatccggccaaccaattcaataaattgcaggaatcacgtagGCCTGa > 1:19032594‑M1/62‑67 (MQ=255) cggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagGCCTGa > 1:2307445‑M1/62‑67 (MQ=255) cggatgcggcgtaaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagGCCTGa > 1:21097195‑M1/62‑67 (MQ=255) aCCCATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc < 1:24108094/68‑1 (MQ=255) aCCCATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc < 1:31143847/68‑1 (MQ=255) aCCCATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc > 1:18124273/1‑68 (MQ=255) aCCCATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc > 1:12610279/1‑68 (MQ=255) cccATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgcg < 1:9070759/68‑1 (MQ=255) ccATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc > 1:43173927/1‑66 (MQ=255) ccATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc > 1:37014190/1‑66 (MQ=255) ccATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc > 1:38233184/1‑66 (MQ=255) ccATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATgc > 1:42624503/1‑66 (MQ=255) ttCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTAc < 1:28989500/68‑1 (MQ=255) ttCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTAc < 1:11515162/68‑1 (MQ=255) ttCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTAc < 1:36549481/68‑1 (MQ=255) ttCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTAc < 1:26769772/68‑1 (MQ=255) ttCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTAc < 1:25525665/68‑1 (MQ=255) cGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTAc > 1:43437434/1‑66 (MQ=255) cGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTAc > 1:14316513/1‑66 (MQ=255) gCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCt > 1:30249842/1‑68 (MQ=255) taaatgccttatccggccaacaaattcaataaattgcaggaatcacgtagGCCTGa > 1:30495400‑M1/51‑56 (MQ=255) tGACCTGAAAGCGATTATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTa < 1:1762883/68‑1 (MQ=255) tGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTa < 1:8706878/68‑1 (MQ=255) tGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTa < 1:12898186/68‑1 (MQ=255) tGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTa < 1:13364116/68‑1 (MQ=255) tGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTa < 1:566251/68‑1 (MQ=255) tGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTa < 1:4780262/68‑1 (MQ=255) tGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTa < 1:20303009/68‑1 (MQ=255) ccTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCa > 1:21521511/1‑68 (MQ=255) tGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:25899480/68‑1 (MQ=255) tGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:7613583/68‑1 (MQ=255) tGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:5457529/68‑1 (MQ=255) aaGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:8320177/1‑68 (MQ=255) aaGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:28190506/1‑68 (MQ=255) aaGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:70771/1‑68 (MQ=255) aaGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:39640499/1‑68 (MQ=255) aGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:25152233/1‑67 (MQ=255) aGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCt > 1:10455185/1‑67 (MQ=255) gCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:29955339/1‑68 (MQ=255) gatgatGAACAAGAAGAAGTGATTAACACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACg < 1:12462880/67‑1 (MQ=255) gatgatGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:28775703/66‑1 (MQ=255) gatgatGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:19255972/66‑1 (MQ=255) gatgatGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACg < 1:2704654/67‑1 (MQ=255) gatgatGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACg < 1:31455144/67‑1 (MQ=255) gatgatGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACg < 1:13996112/67‑1 (MQ=255) gatgatGAACAAGAAGAAGTGACTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACg < 1:35306563/67‑1 (MQ=255) gatgaACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTAt < 1:14864324/68‑1 (MQ=255) aaCAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCa < 1:28391297/68‑1 (MQ=255) aCAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCa > 1:26304884/1‑67 (MQ=255) aCAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCa > 1:39981741/1‑67 (MQ=255) aCAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCa < 1:37885679/67‑1 (MQ=255) aCAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCa > 1:23336641/1‑67 (MQ=255) aCAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGATACGCTTATCAGGCCTACGTTATTTCa > 1:35740082/1‑67 (MQ=255) cAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGc < 1:3424789/68‑1 (MQ=255) aagaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAata > 1:15668115/1‑68 (MQ=255) aagaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAata > 1:32046402/1‑68 (MQ=255) ataagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTCCAGCAatat < 1:1363109/66‑1 (MQ=255) agaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatat < 1:41013860/68‑1 (MQ=255) agaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatat < 1:9456939/68‑1 (MQ=255) agaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatat < 1:18677091/68‑1 (MQ=255) agaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatat < 1:32527537/68‑1 (MQ=255) agaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatat < 1:20832751/68‑1 (MQ=255) agaagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatat < 1:22626066/68‑1 (MQ=255) aagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatatat > 1:33219912/1‑68 (MQ=255) aagTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAatatat > 1:23675870/1‑68 (MQ=255) agTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATAtt > 1:39123666/1‑68 (MQ=255) agTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATAtt > 1:36140015/1‑68 (MQ=255) agTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATAtt > 1:29396386/1‑68 (MQ=255) gTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTg > 1:42276766/1‑68 (MQ=255) tGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGa > 1:38618483/1‑68 (MQ=255) gATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGa < 1:33744454/67‑1 (MQ=255) ttAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAAtt < 1:34723894/68‑1 (MQ=255) ttAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAAtt > 1:6222476/1‑68 (MQ=255) aaaCGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTAc > 1:5120092/1‑68 (MQ=255) aCGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGt > 1:39409619/1‑68 (MQ=255) aCGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGt > 1:31824935/1‑68 (MQ=255) gTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGc < 1:16585485/68‑1 (MQ=255) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCttt < 1:16306825/68‑1 (MQ=255) aTTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTttg > 1:24725382/1‑68 (MQ=255) aTTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTttg > 1:27837346/1‑68 (MQ=255) aTTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGATTttg > 1:4049/1‑68 (MQ=255) GCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTttgttg > 1:27716398‑M1/1‑68 (MQ=255) | GAAGTACAACCCATTCGCTGACCTGAAAGCGATGATGAACAAGAAGAAGTGATTAAAACGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTGTTG > CP009273/426357‑426491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |