| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 426424 = | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (1/98 nt) | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 4460260 | NA (NA) | noncoding (63/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 566 total aligned reads displayed.
TTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGC > CP009273/4460193‑4460326 | tCATGCCGTATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:39813625‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAATTTCAATAAATTGCAGGAATCACGTAGg > 1:21471891‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:21378916‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:18780203‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:36939928‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:38314745‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:669313‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:40383650‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:34652874‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:15370790‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:6392075‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:8057407‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:12740138‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:12532140‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:12042479‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:33039700‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:22369301‑M2/1‑67 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:32555724‑M2/1‑67 (MQ=255) tCATGCCGGATGCGACGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGg > 1:14431074‑M2/1‑67 (MQ=255) ccGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGgcctga < 1:31622245‑M2/68‑7 (MQ=255) ccGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGgcctga < 1:34184420‑M2/68‑7 (MQ=255) cGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGgcctga > 1:2307445‑M2/1‑61 (MQ=255) cGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGgcctga > 1:19181335‑M2/1‑61 (MQ=255) cGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGgcctga > 1:3199701‑M2/1‑61 (MQ=255) cGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGgcctga > 1:768679‑M2/1‑61 (MQ=255) cGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGgcctga > 1:41339381‑M2/1‑61 (MQ=255) tGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGc < 1:14050685/68‑1 (MQ=255) tGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGc < 1:26256640/68‑1 (MQ=255) gcggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCg > 1:11719720/1‑68 (MQ=255) gTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcg < 1:202343/68‑1 (MQ=255) aaaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcgc < 1:15936253/67‑1 (MQ=255) aaaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa < 1:11067469/68‑1 (MQ=255) aTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATc < 1:2031652/68‑1 (MQ=255) aTGCCTTATCCGGCCAACAAAATCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGGAGCGCATc < 1:43548850/68‑1 (MQ=255) tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCa > 1:13752122/1‑68 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:30074951/1‑67 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:27964900/1‑67 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:20761889/1‑67 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:8504477/1‑67 (MQ=255) cTTATCCGGCCAACAAATTCAATAAATTGCATGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGc < 1:25693084/68‑1 (MQ=255) cTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGc < 1:3103937/68‑1 (MQ=255) aTCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt < 1:16708975/68‑1 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTTATAAGCGTAGCGCATCAGGCGAtt > 1:13495998/1‑68 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAtt > 1:24542094/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:43236424/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:1002993/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:14801168/1‑68 (MQ=255) ccGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAttt > 1:22221723/1‑68 (MQ=255) gCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGc > 1:10888763/1‑68 (MQ=255) ccAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCg > 1:4918280/1‑68 (MQ=255) caacaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGt > 1:18053484/1‑68 (MQ=255) aacaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGtt < 1:41647056/68‑1 (MQ=255) caaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTg < 1:4813193/68‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:27613079/68‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc > 1:32364282/1‑68 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:23445878/68‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:31300411/68‑1 (MQ=255) aaTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtc < 1:28952528/68‑1 (MQ=255) aTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtca < 1:37458964/68‑1 (MQ=255) aTTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGtca < 1:36394968/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:39061301/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:16520551/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:38869990/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:40163814/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:1620822/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:6101646/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:35587542/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:5537302/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:30248889/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:2547983/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:22951885/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:22594061/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:5357003/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:7032877/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGa < 1:7190766/68‑1 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGAGTTTGTCATCAGa < 1:37993772/68‑1 (MQ=255) aaaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACt > 1:17475554/1‑68 (MQ=255) aaaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACt > 1:39398325/1‑68 (MQ=255) aaaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACt > 1:29362420/1‑68 (MQ=255) aaaTTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACt < 1:28219028/68‑1 (MQ=255) ttGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTaa < 1:2639201/68‑1 (MQ=255) tGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAt < 1:3591316/68‑1 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCg > 1:9603220/1‑68 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:42443152/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:10372583/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:13126801/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:21712320/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCgg < 1:42816145/66‑1 (MQ=255) aaTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGc > 1:26895664/1‑68 (MQ=255) tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCAt < 1:28642347/68‑1 (MQ=255) tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCAt < 1:24253157/68‑1 (MQ=255) cACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATg < 1:33569185/68‑1 (MQ=255) cACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATg < 1:42046148/68‑1 (MQ=255) cGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGAt > 1:9257553/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:19805236/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:36649461/1‑67 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATa > 1:11427244/1‑67 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATaa > 1:33459501/1‑66 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGc < 1:24947359/68‑1 (MQ=255) aGGCCTGATAAGCCTAGCGCATCAGGCGATTATGCGTTTGACATCAGACTTAATCCGGCCATGAAAg > 1:17174725/1‑67 (MQ=21) | TTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGC > CP009273/4460193‑4460326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |