| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 719576 = | 405 (0.770) | 20 (0.050) | 13/94 | NT | 6.7% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 221 (0.500) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
Only 100 of 547 total aligned reads displayed.
TGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719509‑719643 | gACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAgg < 1:37295566/68‑1 (MQ=255) gggAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:18503004/1‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:16712918‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:32671343‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:42886701‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:40456941‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgtgctgccgttaaaacgccaggcgtaccgtGggcggc > 1:37794085‑M1/62‑68 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa > 1:10020882/1‑67 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa > 1:26173332/1‑67 (MQ=255) taccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCAt > 1:913902‑M1/59‑67 (MQ=255) taccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCAt > 1:38543761‑M1/59‑67 (MQ=255) ccTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATc > 1:13612532/1‑68 (MQ=255) ccTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGAGGCATc > 1:11251757/1‑68 (MQ=255) cTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCg > 1:17000461/1‑68 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:29541776/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:7375164/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:797870/1‑67 (MQ=255) gcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATc > 1:1186415/1‑68 (MQ=255) tACTGTGCGCCAGTTCGTCCATTAAGATAAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCaa > 1:9406225/1‑66 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:11037326/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:25680590/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:16050318/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:273708/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:4831478/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:22056963/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:43231026/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:3608364/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACt < 1:39195763/68‑1 (MQ=255) aCTGTGCGCCAGTTCGTCCATAAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:10527419/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:42140613/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:22176609/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:23590348/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:2920090/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:14002240/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGAACAAACTc > 1:15742973/1‑67 (MQ=255) gtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:19362668/1‑66 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:19694699/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTg > 1:14335391/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:39600955/1‑68 (MQ=255) ccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata > 1:27607645/1‑68 (MQ=255) ccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata > 1:4996028/1‑68 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:26956865/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:8370090/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:39877577/1‑67 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:18137599/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:30580090/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:2337983/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:29894249/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:20047033/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:14532940/1‑68 (MQ=255) tCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccg < 1:26354131/68‑1 (MQ=255) tCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgc < 1:42381868/66‑1 (MQ=255) cGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc < 1:28696830/68‑1 (MQ=255) cGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc < 1:18932940/68‑1 (MQ=255) gTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgcc < 1:32069282/68‑1 (MQ=255) ctgttctgccgttaaaacgccaggcgtaccgtGGGGGGCATCGAGATCAAACTCGCTGATATgccgc > 1:6902694‑M1/33‑67 (MQ=255) ccATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGccc < 1:4264203/67‑1 (MQ=255) cATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCAc < 1:521014/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:1731931/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:33902501/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:30806533/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:24150319/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:28177065/68‑1 (MQ=255) ctgccgttaaaacgccaggcgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACgg < 1:6371896‑M1/41‑1 (MQ=255) tAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGt > 1:31142982/1‑68 (MQ=255) gATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc > 1:20281135/1‑67 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCGCACGGTACg > 1:25238295/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:4677517/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:7731435/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:40698986/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:32908840/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:5611438/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:10177300/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:230949/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:30273967/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg < 1:16557293/66‑1 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:36943984/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:31530107/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:21649655/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:35009576/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:3477237/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg < 1:34421794/66‑1 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:33271860/1‑66 (MQ=255) gccgcgcCGGGCGGCGGGCGAGGGCGGCAGCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg < 1:20555141/63‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:23799356/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:10704346/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:3529863/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:13097639/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:38049953/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:38773938/1‑68 (MQ=255) gcggcgGGCGAGGGCAGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:24494426/1‑68 (MQ=255) ggcgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAAc > 1:17722302/1‑68 (MQ=255) cgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTTCGGCTGGCGTTTTTACg < 1:39301784‑M1/60‑1 (MQ=255) cgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:15196753/67‑1 (MQ=255) cgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:12628344/67‑1 (MQ=255) cgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:37466552/67‑1 (MQ=255) gggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGc < 1:25044715/68‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCAGGGTACGCCTGGCGTTTTAACGGCagc < 1:36304655‑M1/65‑2 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:20980675‑M1/65‑1 (MQ=255) cgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAg < 1:6716521/67‑1 (MQ=255) | TGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719509‑719643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |