| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 719576 = | 405 (0.770) | 20 (0.050) | 13/94 | NT | 6.7% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 221 (0.500) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
Only 100 of 481 total aligned reads displayed.
CCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC > CP009273/719546‑719680 | tctgccgttaaaacgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACg < 1:38727056‑M2/3‑1 (MQ=255) tctgccgttaaaacgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACg < 1:20980675‑M2/3‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:37579222/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:24500048/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:38415000/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:20183182/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:18209116/68‑1 (MQ=255) tAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGt < 1:14244943/68‑1 (MQ=255) tAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGt > 1:5124402/1‑68 (MQ=255) gccgttaaaacgccaggcgtaccgtGGGCGGCATCGCGGTCAAACTGGCTGCTATGCCGCCCCCGGt < 1:6046727‑M1/42‑1 (MQ=255) gccgttaaaacgccaggcgtaccggGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCGCGGt < 1:29676636‑M1/42‑1 (MQ=255) aGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc > 1:25732620/1‑68 (MQ=255) gATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc > 1:14898894/1‑67 (MQ=255) cgttaaaccgccaggcgtaccgtgggcggcataacagcgagtttgatctcgatgccgcccACGGCAc < 1:172337‑M2/7‑1 (MQ=255) aTCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:13446933/1‑67 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCGCACGGTACg > 1:25238295/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:12265721/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg < 1:16557293/66‑1 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:3246376/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:5611438/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:11723347/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:11168252/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:39715100/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:42046358/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTAAGTCATAAGCCGCCAACGCTAcc > 1:15824149/1‑65 (MQ=25) gcgcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTg > 1:26324204/1‑67 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCCCGGTACGCCTGGCg > 1:12727845/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:10850099/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:25475190/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:23799356/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:22837967/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:30153083/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:31424197/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:33902528/1‑68 (MQ=255) cgtgggCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:34186066/4‑68 (MQ=255) gggCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGttt < 1:42475304/68‑1 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGCGCAAACTCGCTGATATGCCGCCCCCGGTCCGCATGGCGTTTTa > 1:17361108/1‑68 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:33312094/1‑68 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:20015442/1‑68 (MQ=255) ggcgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAAc > 1:17722302/1‑68 (MQ=255) ggcgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAAc > 1:30688645/1‑68 (MQ=255) gcgtaccgtGGGCGGCATGGAGATCAAACTCGCTGATATGCCGCCCCCGGTACGCCGGGCGTTTTAAc < 1:7176616‑M1/59‑1 (MQ=255) gcgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGGTTTAAc < 1:21418475‑M1/59‑1 (MQ=255) cgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTTCGGCTGGCGTTTTTACg < 1:39301784‑M1/60‑1 (MQ=255) gtaccgtgggcggcatatcagcgagtgtcagcccgatgccgcccACGGTACGCCTGGCGTTTTAACg < 1:6714169‑M2/23‑1 (MQ=255) cgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:39925909/67‑1 (MQ=255) cgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:15196753/67‑1 (MQ=255) cgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:8096186/67‑1 (MQ=255) gggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGc < 1:37038650/68‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:24437372‑M1/65‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:2803546‑M1/65‑1 (MQ=255) gcggcatatcagcgagtttgatctcgatgccccccACGGTACGCCTGGCGTTTTAACGGCAGAAcag > 1:6902694‑M2/36‑67 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTCCGCCTGGCGTTTTAACGGCAGAAcag < 1:4065535‑M1/67‑1 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcag < 1:36381170‑M1/67‑1 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAca > 1:35681992‑M1/1‑66 (MQ=255) gcatatcagcgagtttgatctcgatgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAAcagcca > 1:34905733‑M2/33‑67 (MQ=255) CATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccag < 1:18689504‑M1/67‑1 (MQ=255) ATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccagc < 1:19022728‑M1/67‑1 (MQ=255) ATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACagccagcc > 1:7804212‑M1/1‑68 (MQ=255) ATCGAGATCAAACTCGCAGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACagccagcc > 1:31108251‑M1/1‑68 (MQ=255) TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccagc < 1:4487960‑M1/66‑1 (MQ=255) TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGccc > 1:38984421‑M1/1‑68 (MQ=255) TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGccc > 1:36118420‑M1/1‑68 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:23991654/68‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:23550482/68‑1 (MQ=255) gataTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:2729844/65‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:26997688/68‑1 (MQ=255) gaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTcc > 1:2326442/1‑68 (MQ=255) tCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTcc < 1:32715086/66‑1 (MQ=255) aaCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCAt > 1:32309500/1‑68 (MQ=255) aCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:260755/1‑68 (MQ=255) aCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:41051501/1‑68 (MQ=255) cTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:2206074/1‑67 (MQ=255) tctcgatgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggcggc > 1:20541477‑M2/15‑68 (MQ=255) tGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGgcggcg > 1:9024650/1‑68 (MQ=255) atatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt > 1:2750426/1‑68 (MQ=255) atatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt > 1:1689217/1‑68 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt < 1:43496631/67‑1 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:8795734/1‑68 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:9649561‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:10353249‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:28416030‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:29186926‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:34721273‑M2/10‑67 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGCACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:37794085‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCCGCCCTTCCAGCATGGCGGCGGTATCt > 1:10639936‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:32970702‑M2/61‑1 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:10094309‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:42648607‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:34423464‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:5310922‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:4879290‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:40456941‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:42886701‑M2/61‑1 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATTGCGGCGGTATCtt < 1:6631117‑M2/62‑1 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:30316187‑M2/6‑68 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:7474060‑M2/6‑68 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:38089402‑M2/6‑68 (MQ=255) cccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc > 1:9353455‑M2/4‑68 (MQ=255) cACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCCGCATGGCGGCGGTATCTTTTCGc < 1:19586021‑M2/67‑1 (MQ=255) | CCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC > CP009273/719546‑719680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |